PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000204989
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 95aa    MW: 10866.2 Da    PI: 6.9578
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000204989genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.8e-0921611454
                   HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   d+i++ +++L+ llP++ ++++  +s ++iLe+++ YI+ L
  MDP0000204989 21 DEIKELISKLQPLLPQLHHTRNAPVSASSILEETCSYIRRL 61
                   689*************88*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.693761IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-62161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-82176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-82176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSSRRPSSSS SSSRMSKPSD DEIKELISKL QPLLPQLHHT RNAPVSASSI LEETCSYIRR  60
LHREVEDLSQ RISRLLDSAD ISDVDEELIR RLLQH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.164151e-51bud| fruit
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393139.27e-59transcription factor PRE6-like
SwissprotQ9LJX17e-22PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A498I2Z46e-57A0A498I2Z4_MALDO; Uncharacterized protein
STRINGXP_008351836.11e-48(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106242439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.18e-23bHLH family protein