PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000204390
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 329aa    MW: 35829.9 Da    PI: 7.3275
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000204390genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009141163123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+++F++   L  H  +H
  MDP0000204390 141 YQCKTCDRCFPSFQALGGHRASH 163
                    9***********99999998887 PP
2zf-C2H211.10.0012232254123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C+ Cg  F +   L  H+r+H
  MDP0000204390 232 HECSVCGAEFASGQALGGHMRRH 254
                    78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.42E-8140163No hitNo description
PROSITE profilePS501579.162141168IPR007087Zinc finger, C2H2
PfamPF139121.1E-10141165IPR007087Zinc finger, C2H2
SMARTSM003550.077141163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
SuperFamilySSF576672.42E-8227254No hitNo description
PfamPF139121.4E-12231255IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598232254IPR007087Zinc finger, C2H2
SMARTSM003550.019232254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMMMEAADHQ DQEEAVLGYK DQAQMMIIKG KRTKRQRLTS PLSAIATTAS SSSSAGHDHD  60
HLQDQGLLGP RQRISTDVGP TASPATSSDQ FTEISTEEEE DMANCLILLA QGNSTPKPQN  120
PNLVNNNKAA SAAASAGLYL YQCKTCDRCF PSFQALGGHR ASHRKPGKQA NIHSTIQDNK  180
KALSFLEEVE EFDQFNNTST TLSLQISNRA FRALNSDTTS PCYYKNKANK VHECSVCGAE  240
FASGQALGGH MRRHRTLSST AATTAAAEAM NSHPQSQSGS KRPRNVLQLD LNLPAPEEEH  300
QQETNKFPFG AKKEQVIVFS ASPLVGCQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946595.10.0zinc finger protein ZAT5
TrEMBLA0A498IHV00.0A0A498IHV0_MALDO; Uncharacterized protein
STRINGXP_008387527.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-51C2H2 family protein