PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000204389

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Protein Properties

Length: 196aa MW: 22401.4 Da PI: 8.9845

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000204389	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.5	2e-12	41	130	1	82
EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT.-EEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg.DfvvF 82 f+k+lt+sdv +rl+++k+ +e+h g+++++++ +t++d +g+++ + ++ + ++ vlt+GW++F ++ gL e+ Dfv+ MDP0000204389 41 FEKQLTSSDVRDDqSRLSMSKEDVENHifpllkdGEDPNQGVHVTIYDMDGKEYPMVFKTWMSKI-NVLTGGWNSFRQDRGLVEKiDFVTV 130 99******98779***************9999****************8888874.68************854377765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02362	3.4E-9	41	131	IPR003340	B3 DNA binding domain
CDD	cd10017	1.23E-13	41	145	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.5E-14	41	135	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.14E-15	41	135	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.1E-5	41	149	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MMLGEPQLQG IQGLLYGNYA PPDLPPVPSL RPLIQVHSKP FEKQLTSSDV RDDQSRLSMS 60 KEDVENHIFP LLKDGEDPNQ GVHVTIYDMD GKEYPMVFKT WMSKINVLTG GWNSFRQDRG 120 LVEKIDFVTV WVFRNVLNGS LCFAINSRRF PAVSEAIKRR KRQYXDSGPP LQAHVEFNHI 180 NVLIGRADKS KDVFIK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017182490.1	1e-123	putative B3 domain-containing protein At4g03170
TrEMBL	A0A498HTH4	1e-118	A0A498HTH4_MALDO; Uncharacterized protein
STRING	XP_009376601.1	1e-116	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4148	19	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03170.1	5e-31	B3 family protein

Link Out ? help Back to Top
Phytozome	MDP0000204389