PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000202598
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 352aa    MW: 39852.9 Da    PI: 6.6687
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000202598genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.7e-12181206126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    y   +C+++ +tG+C yGd+CkF+H+
  MDP0000202598 181 YQPDICKDYKETGYCGYGDSCKFMHD 206
                    66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-9177211IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7180207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878180208IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10181206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-12181211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.8E-13242299IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.62E-13257304No hitNo description
PfamPF139201.9E-8257298No hitNo description
CDDcd001622.93E-8258299No hitNo description
PROSITE profilePS5008910.601258296IPR001841Zinc finger, RING-type
SMARTSM001842.7E-4258295IPR001841Zinc finger, RING-type
PROSITE patternPS005180273282IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MADSGGNPEP GKVCNFIPKS SMKQNIRKRR PHEDEEEDNS TYGGTSFPSQ RKAAKPDGKL  60
YFSSGPAKSS TSDGSAIFEF KSSKEIQVEN DSRATATLET ETEFSRDARA VRERVLKQAE  120
EALQGTSKET GNEKLYKGIH GYTDYKAGFR RELTVASEKA GGSHGPLRAS AHIRATTRFD  180
YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEREW EEAEKTRKRN LALGQDDVDQ  240
SEDDDDDDDE DGSLPFACFI CRKPFVDPVV TKCNHYFCEH CALKHHSKNK KCFVCNKPTL  300
GIFNTAHEGK YKWKMGMSKG EVQLENGDEQ RWRNDGRKEV EQSTWKGTQS VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-62732137325RING finger protein 113A
5z58_M5e-62732137325RING finger protein 113A
6ff4_t5e-62732137325RING finger protein 113A
6ff7_t5e-62732137325RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008370229.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_028957154.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-153C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A498K8360.0A0A498K836_MALDO; Uncharacterized protein
STRINGXP_008370229.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-154C3H family protein