PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000198054
Common NameDREB1
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 335aa    MW: 37183.8 Da    PI: 6.8512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000198054genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.7e-18160211155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr++  +++Wv+e r+p   + k+ r++lg++ tae+Aa+a++ a+++++g
  MDP0000198054 160 PVYRGVRRRN-NNKWVCEMREP---NkKKSRIWLGTYPTAEMAARAHDVAALAFRG 211
                    68*****887.8******9998...5477************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-14160211IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21161221IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-30161221IPR001471AP2/ERF domain
PROSITE profilePS5103222.589161219IPR001471AP2/ERF domain
SMARTSM003802.1E-28161225IPR001471AP2/ERF domain
CDDcd000182.44E-29162221No hitNo description
PRINTSPR003671.5E-7162173IPR001471AP2/ERF domain
PRINTSPR003671.5E-7185201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MYIYEXRFPP SSITPPLCGN XGTCLCGQHF LHLAPPHTPC TTCVVLGPTQ SLSNPQKKPT  60
AIRSTSLSLQ FSTXNSKKKC STETHSQLTA QFLRRSTTKM NTIFSTQLSD SSEKPESSSD  120
DTSITAQSQL ASFSDEEVIL ASSRPKKRAG RRVFKETRHP VYRGVRRRNN NKWVCEMREP  180
NKKKSRIWLG TYPTAEMAAR AHDVAALAFR GKLACLNFAD SAWRLPVPAS IDSVDIRRAA  240
AEAAETFRPA EFGGVLESGD DEXESKKMEE EKDCGGVEGS GILFYLDEEE MFDMPRLLDS  300
MAEGLLLSPP HSSGGYMNWD DMGSNDDVSL WSFSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-14148218371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.227650.0fruit| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6698150.0JQ669815.1 Malus x domestica dehydration-responsive element-binding protein (DREB1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028960000.10.0LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 1E
SwissprotQ9FJ932e-63DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLI1Z6720.0I1Z672_MALDO; Dehydration-responsive element-binding protein (Fragment)
STRINGXP_008364557.11e-173(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-59C-repeat-binding factor 4
Publications ? help Back to Top
  1. Zhao T,Liang D,Wang P,Liu J,Ma F
    Genome-wide analysis and expression profiling of the DREB transcription factor gene family in Malus under abiotic stress.
    Mol. Genet. Genomics, 2012. 287(5): p. 423-36
    [PMID:22526429]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  4. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  5. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  6. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]