PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000198015
Common NameC2H2L24
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 271aa    MW: 28792.4 Da    PI: 8.1699
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000198015genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-05107129123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C+ksFs+   L  H  +H
  MDP0000198015 107 YKCSVCDKSFSSYQALGGHKASH 129
                    9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0034107129IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-13107131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.305107134IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-9107129No hitNo description
Gene3DG3DSA:3.30.160.605.4E-4107129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-9158185No hitNo description
SMARTSM003550.19163185IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411163185IPR007087Zinc finger, C2H2
PfamPF139123.5E-13163187IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MALQALNSPT HAGSSPFQLE TKTSSFSYVE PWTKRKRSKR PRLDTPHTEE EYLALCLIML  60
ARGNRDGDLA ATTATKATAS AASHQIITQS PSMELSTSTA PPANLSYKCS VCDKSFSSYQ  120
ALGGHKASHR KGSAAGSAVE GPSTSSNTTN SATTTAIPSG RSHECSICHK SFPTGQALGG  180
HKRCHYDGGA XGSTATTSAI TSSEGVGSTS HAVSHGHPRE TFDLNLPALP EFSRDFFVSG  240
EEEVESPHPT NKPRLLLIVK PKMEXPQDQQ N
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.39090.0bud| cell culture| flower| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2793105e-69AY279310.1 Malus x domestica enolase-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357375.20.0LOW QUALITY PROTEIN: zinc finger protein ZAT10-like
TrEMBLD9ZIT41e-175D9ZIT4_MALDO; C2H2L domain class transcription factor
STRINGXP_008357375.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-56salt tolerance zinc finger