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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | MDP0000196258 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 248aa MW: 27989.3 Da PI: 7.6378 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 34 | 3.9e-11 | 158 | 218 | 32 | 96 |
GRAS 32 spdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96
++dp++R+++yf+eAL++r++ ++se ++++ + ++ ++ + ++k++++++P+ kf+hl
MDP0000196258 158 LDHRDPTKRVTFYFAEALQNRVSLMQSEK--SFTT--AYDTPCEDFMLSYKALNDACPYSKFAHL 218
3466*******************944333..3333..333348999******************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03514 | 1.3E-8 | 158 | 218 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 248 aa Download sequence Send to blast |
MCSSRSWNES FGGRDGSRYS SSGRQRCSSG VVDWLDWRVG LGFQATVWCR QCVGGDLMRA 60 AMSGAGLMQV QYGLVGSSLR REEEQTQWWA IARVTAGGSA RLRLQTLTDF FFGNDNKRVM 120 TSTSSTSWTW GCGCFMEVEE GNDICSTQSF SLNLESVLDH RDPTKRVTFY FAEALQNRVS 180 LMQSEKSFTT AYDTPCEDFM LSYKALNDAC PYSKFAHLNG ESSNTRSDGE REKDRQRLHS 240 IVRPRLLL |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Mdo.1352 | 2e-87 | bud| fruit| leaf| root| stem | ||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G66770.1 | 2e-14 | GRAS family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | MDP0000196258 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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