PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000191281
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 603aa    MW: 67048.4 Da    PI: 9.9194
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000191281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05293314323
                    ETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                    Cp Cg++F +++ L++H +  H
  MDP0000191281 293 CPVCGRRFYTNEKLMNHFKQiH 314
                    *****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.221291319IPR007087Zinc finger, C2H2
PROSITE patternPS000280293314IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-4293316IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
CDDcd061671.48E-6361444No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MYANAFKEKL KFVDGVVPEE PLEAVGEIRG RKFDLLDEIG XGEEGVSXDV LGGGEGXAAG  60
GVEVVGEDLL SLADGFGLVP WGDVGELREP CGGGGGGGGC SGEMVGKEEG VEAFGQGHAI  120
TPSKGQNMPP PTPNPNFPSS CHPSTHTRVR VRPIAALKRR RDDEFAAVFV SFSRSQVQSS  180
RPETLIPFTQ FNRYCHFQST TGFYSSNPSS CLAPKKISEN SVAIFWDLDT RPPKSVSPYK  240
AAVKLKTAAS SFGIVRHMIA YANRNALNYV PQVIWERKER NRVVIRDGES NICPVCGRRF  300
YTNEKLMNHF KQIHETEHVK RLNQIESARG SRRVKLVGKY SMKMEKYKKA ARDVLTTKVG  360
RGLADEVXQA GXWIRSVLDK PQGVKVALRN HIVDMMDHRR VXCLMLVSDD SHFVDVVMEA  420
KLRCLKTVVV GDFGDGALKR AADSGFSWNE ILIGKAEKEA VSVVGKWKDR DVLKRLEWTF  480
MVKARDWSGQ TSQMGIKVCI NGMMRFMVKA RMTISKVLLV RRITIWGRTM LATGGSLTLI  540
PRPFHYNHPD DTRLFVKPGR LSFTYSWLVY ALFQDIVNCV PGXSVSVYGG KGERKAYTNS  600
VLW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028964500.10.0uncharacterized protein LOC103444269
RefseqXP_028964501.10.0uncharacterized protein LOC103444269
RefseqXP_028964502.10.0uncharacterized protein LOC103444269
TrEMBLA0A498JA840.0A0A498JA84_MALDO; Uncharacterized protein
STRINGXP_008381417.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-110C2H2 family protein