PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000191017
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 356aa    MW: 39731.2 Da    PI: 5.5718
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000191017genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.61.1e-27131192159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK++ g+++pr+YYrCt++   gC ++k+v++s+ dp++++ tY+g H+++
  MDP0000191017 131 LDDGYSWRKYGQKDILGTNHPRGYYRCTHRgtqGCVATKQVQKSDADPTIFVLTYRGLHTCS 192
                    59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-27128193IPR003657WRKY domain
SuperFamilySSF1182906.8E-25130193IPR003657WRKY domain
SMARTSM007743.0E-38131193IPR003657WRKY domain
PROSITE profilePS5081122.928131189IPR003657WRKY domain
PfamPF031067.8E-25132191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEKRKSMEWE QKSLSNELTQ GKELAEQLMS HLHHSSSQET KDFLISKILF SYDKALSLLT  60
GSGDGSDGES KHIAAHESML ESPTSFGNSS PLSEISDQDC KDKNVFKKRK TMPRWTKEVK  120
VSTGTGLDGS LDDGYSWRKY GQKDILGTNH PRGYYRCTHR GTQGCVATKQ VQKSDADPTI  180
FVLTYRGLHT CSQVSRSARV KEEFKGNQNK TLEVEKPNQF STEMSFSFGR AGLRVKTDHL  240
DTRENDIFPS FSFPSTPIES ENVGDHIFSA IMMESNLMDD YAPVFGSPAT TFESDYLTVS  300
PCHVSSFGLV HEVQTSESGL TEIISAPTSV TNSPIGDFDF SIDDLEFHPD YFGLKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19130191768OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.6870.0bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1129140.0JX112914.1 Malus hupehensis WRKY transcription factor 46 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376066.20.0LOW QUALITY PROTEIN: probable WRKY transcription factor 46
TrEMBLA0A498JBH90.0A0A498JBH9_MALDO; Uncharacterized protein
STRINGXP_008376066.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.17e-43WRKY family protein