PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000190656

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 690aa MW: 80750.2 Da PI: 6.5837

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000190656	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.3	2.6e-23	79	163	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ke GF +r+s+s +++++e +++++ Cs g++++++ + ++r+etrtgC a++++++ ++++w++ +leleHnH+++ MDP0000190656 79 DFYNLYGKEQGFGIRVSNSWFRSKKKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVVIRLVDSKRWRIVELELEHNHQVS 163 6***************************************99888.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-21	79	164	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.3E-28	286	378	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.371	572	608	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.3E-4	581	605	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	583	610	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MDPENKKFIT FXLLYRQLGA LPMEEVSLNT EPVFDEGDDY ELEGDFTEHD HGTGETNRKR 60 DPREPTVGLE FDSFDEAYDF YNLYGKEQGF GIRVSNSWFR SKKKERYRAK LSCSSAGFKK 120 KSEANNPRPE TRTGCPAMVV IRLVDSKRWR IVELELEHNH QVSPQIKRFY KSHKKMILAA 180 KSAQPPPEPV TEVHTIKLYR TPVLDVGCSG YSNFSETEGL NSIDPSKHLE LKEGDTHAVY 240 NYFCRMKLTN PNFYYLMDLD DDGRLRNVFW ADARSRAAYG YFCDTVAIDT TCLVNKYEIP 300 LISFVGVNHH GQSVLLGCGF LGQELEENFV WMLRAWLKCM LGRPPQVFIT DQCKPLQSAV 360 SEVIPNARHC YCLWYIMQRV PEKLGGLRGY DEIKRQLHKA VYNSLKIAEF ETSWAEMIKR 420 HELGDNRWLQ ILYDDRQMWV PVYLKDTFLA GMIPIREQES STAFFDGYVH KHTSFKEFVD 480 KYDLALHRKR MKEVAADVES RSSSFELRTR CNFEEQLRNV YTKEIFRRFQ LEVEGMYACF 540 NTRQVNVTGS ILTYIVKERV EVEGNEKEVR XYEVLYESTQ VDIRCICSLF NYKGYLCRHA 600 LNVLNYNGVE EVPSRYILPR WSKDFKCRYL LHHSSSDIDV YDPVYWHNHL YKLALPVAEE 660 GAQSEENYKT TLLALEELLN KFHIVEDNQV

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MDPENKKFIT FXLLYRQLGA LPMEEVSLNT EPVFDEGDDY ELEGDFTEHD HGTGETNRKR  60
DPREPTVGLE FDSFDEAYDF YNLYGKEQGF GIRVSNSWFR SKKKERYRAK LSCSSAGFKK  120
KSEANNPRPE TRTGCPAMVV IRLVDSKRWR IVELELEHNH QVSPQIKRFY KSHKKMILAA  180
KSAQPPPEPV TEVHTIKLYR TPVLDVGCSG YSNFSETEGL NSIDPSKHLE LKEGDTHAVY  240
NYFCRMKLTN PNFYYLMDLD DDGRLRNVFW ADARSRAAYG YFCDTVAIDT TCLVNKYEIP  300
LISFVGVNHH GQSVLLGCGF LGQELEENFV WMLRAWLKCM LGRPPQVFIT DQCKPLQSAV  360
SEVIPNARHC YCLWYIMQRV PEKLGGLRGY DEIKRQLHKA VYNSLKIAEF ETSWAEMIKR  420
HELGDNRWLQ ILYDDRQMWV PVYLKDTFLA GMIPIREQES STAFFDGYVH KHTSFKEFVD  480
KYDLALHRKR MKEVAADVES RSSSFELRTR CNFEEQLRNV YTKEIFRRFQ LEVEGMYACF  540
NTRQVNVTGS ILTYIVKERV EVEGNEKEVR XYEVLYESTQ VDIRCICSLF NYKGYLCRHA  600
LNVLNYNGVE EVPSRYILPR WSKDFKCRYL LHHSSSDIDV YDPVYWHNHL YKLALPVAEE  660
GAQSEENYKT TLLALEELLN KFHIVEDNQV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008352060.2	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	M5Y3I6	0.0	M5Y3I6_PRUPE; Uncharacterized protein
STRING	XP_008352060.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	MDP0000190656