PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000190504
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 274aa    MW: 30364.2 Da    PI: 6.7902
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000190504genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20118168155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++++GVr+++ +grW+AeIrdp+    r kr++lg+f+taeeAa  +++a+  l+g
  MDP0000190504 118 KKFRGVRRRP-WGRWAAEIRDPT----RrKRIWLGTFDTAEEAATVYDRAAILLKG 168
                    59********.**********84....34**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.0E-679272IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000185.19E-32118178No hitNo description
PfamPF008477.0E-13119166IPR001471AP2/ERF domain
SMARTSM003801.2E-36119182IPR001471AP2/ERF domain
PROSITE profilePS5103223.92119176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29119176IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22119176IPR016177DNA-binding domain
PRINTSPR003672.1E-10120131IPR001471AP2/ERF domain
PRINTSPR003672.1E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MTTFQPISSV HSTVKFSEQI TTVXKPMIQE PDNPTRIPPK LVRIILTDAD ATDSSSDDED  60
RGVRRVKRHV RQISLEHSXP SSSSPSSSSS VSSGQSKRAR KDSRPGSKXP ETTADRRKKF  120
RGVRRRPWGR WAAEIRDPTR RKRIWLGTFD TAEEAATVYD RAAILLKGPD AVTNFSNAVI  180
KEETVVGDLT VPAAXQXCGC VSPSSSEALS SPTSVLRYGD QTPFDGLSYG YXDAFKFDFD  240
LPLSLPDIMF SSXSFARDEF GEFDVDDFLA DVVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-191191751471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115125RRKKFRGVRRR
2123142RRRPWGRWAAEIRDPTRRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.170000.0fruit| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5065750.0KM506575.1 Eriobotrya japonica transcription factor ERF9 (ERF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384656.21e-175pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A0H3Y9971e-173A0A0H3Y997_9ROSA; Transcription factor ERF9
STRINGXP_009358484.11e-171(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.13e-23cytokinin response factor 3