PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000190237
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 289aa    MW: 32030.3 Da    PI: 9.4447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000190237genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-18136185255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrdp    ++ +r++lg+f tae Aa a++ a+++++g
  MDP0000190237 136 HYRGVRRRP-WGKWAAEIRDP----IKaARVWLGTFNTAEAAALAYDGAALRFKG 185
                    69*******.**********7....357**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-23135194No hitNo description
Gene3DG3DSA:3.30.730.102.6E-31136194IPR001471AP2/ERF domain
SMARTSM003802.1E-36136199IPR001471AP2/ERF domain
PfamPF008472.9E-12136185IPR001471AP2/ERF domain
PROSITE profilePS5103224.829136193IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21136194IPR016177DNA-binding domain
PRINTSPR003674.2E-11137148IPR001471AP2/ERF domain
PRINTSPR003674.2E-11159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSRQPAPPSP LLHPPVHGTX TDSYQSDMSQ PYEVPFCRVK LDKVDLKHGK RPLASVESEE  60
KEEDQIFPVY SARSQQDTSA MVSALAQVIG NNSDQINNPL DQVQGISSLI TSQSSPTETQ  120
SQPVLLQDQG NLRRQHYRGV RRRPWGKWAA EIRDPIKAAR VWLGTFNTAE AAALAYDGAA  180
LRFKGSKAKL NFPERVVQGS SESGCLTITT QLQHSLNNIP PEANISRPTY SNVFDYARYN  240
NVTSTSSSSM PSQQAAELRS FSMQFGSSSS SSSGPPYKYR KDFDRSHSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-25135199469ATERF1
3gcc_A2e-25135199469ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.300870.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}.
UniprotTISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028960109.11e-126ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH546e-53EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A498I7510.0A0A498I751_MALDO; Uncharacterized protein (Fragment)
STRINGXP_008351719.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]