PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000186332
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 839aa    MW: 93337.7 Da    PI: 6.1956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000186332genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.9e-10714755351
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                     +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  MDP0000186332 714 LRGVYF--KNMKWHAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 755
                    59**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.103.3E-1814163IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.38E-2016167IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514507.7816485IPR001611Leucine-rich repeat
PROSITE profilePS514506.1186108IPR001611Leucine-rich repeat
SMARTSM0002884347380IPR019734Tetratricopeptide repeat
SuperFamilySSF484521.73E-22348458IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.107.5E-24350463IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5029315.324363448IPR013026Tetratricopeptide repeat-containing domain
PROSITE profilePS500059.027381414IPR019734Tetratricopeptide repeat
SMARTSM000280.0099381414IPR019734Tetratricopeptide repeat
PROSITE profilePS500055.812415448IPR019734Tetratricopeptide repeat
SMARTSM0002827415448IPR019734Tetratricopeptide repeat
SuperFamilySSF497649.29E-30501602IPR008978HSP20-like chaperone
PROSITE profilePS5120315.473504593IPR007052CS domain
Gene3DG3DSA:2.60.40.7901.1E-25504593IPR008978HSP20-like chaperone
PfamPF049692.8E-14510583IPR007052CS domain
CDDcd064661.56E-27511593No hitNo description
SMARTSM003806.0E-4713770IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-7713758IPR016177DNA-binding domain
PfamPF008473.3E-4714756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-5716759IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MVSSTTPQAS HTMTRKLPSS ITGLKNLRSV LLSLHGLNSL TLLGLGNCGL TDDAIPKDLG  60
SLFSLEILEL DGNLFYSLPS LSGLSKLKML DLSYCKNLLE IPDLPRSLEI LRANQCIALA  120
KLPNFSEMSS MVELHLNHSP KLSEILGLHK SLXTMRRIHM EGCTNLTADF RKNIIQGWTS  180
CGHGDIFLXG IYDIPEWFQI VGIHEPNDVR FKVPXNFRGL TVCCVFXTYC PGFTVTNITK  240
RKALHTWXES TCWVADSVLR LQSVLSNDVL HLQSGDEVSI SAVTKAHGRG RVIGRVMKTG  300
XNLVWDDGNA GDKYTSIEEI GAVPRNNSSE ETLPSPSVHM DGCLPMASDL EKCANEAFID  360
DCFKLAVDLY THAIAFNPQS AELYTNRAQA NIKSGNLTEA VADANKAIEF DPLXYKAYLR  420
KGIACIKLXE YQTAKATLEI GAPLAPHETR FANLIKECDE KIAEETAVLP TASLEKNITE  480
NVIPAKNVQP ASQPSNQVTT TYVKPKYRPA FYQKPEEVVV TIFAEGISAK DVNVDFGEQK  540
LGVSIDVAGE DTYHFQTRLF GKIIPEMCRF DVLSTKVEIR LAKAEPLHWT SLEFSEDNPV  600
PLKVTGPVVG VLSPSYLSSK PRTNPVTVHP MPLNDANQPD GVLLACLGHS SDRISTFFVN  660
IXVCMNTIVK AEPRSFIASG FSLSEEQHDV AGPPVKHRKQ HRXKYAQNQE PSLLRGVYFK  720
NMKWHAAIKV DKKQIHLGTV GSQEEAAHLY DRAAFMCGRE PNFELSEEEK QELRKFKWDE  780
FLVMTRHAIT NKKHMRRQGA ESEKRSESPQ LEDSDWEDDX EEVSGLSASE DAEQDMLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jki_S2e-33506593188SGT1-LIKE PROTEIN
2jki_T2e-33506593188SGT1-LIKE PROTEIN
2jki_U2e-33506593188SGT1-LIKE PROTEIN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.267560.0root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1831010.0GU183101.1 Malus hupehensis sgt1-b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347425.10.0PREDICTED: TMV resistance protein N-like
RefseqXP_009347433.10.0PREDICTED: TMV resistance protein N-like
TrEMBLA0A498J3I50.0A0A498J3I5_MALDO; Uncharacterized protein
STRINGXP_008348554.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.27e-40ERF family protein