PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000186131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 27949.3 Da PI: 7.6657 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.2 | 5.4e-20 | 115 | 165 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrd + + +r++lg+f tae Aa+a+++a+++++g+ MDP0000186131 115 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFETAEAAAQAYDQAALRFRGN 165 7********.**********66.....56*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.3E-35 | 115 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.396 | 115 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-13 | 115 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-22 | 115 | 173 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 115 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 116 | 127 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.71E-16 | 123 | 174 | No hit | No description |
PRINTS | PR00367 | 1.4E-11 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSAMVSALTH VVAGDENEVA AAGVNSDSRT SSWGSVGTKR RREEEEEGGG GGGPLSESVT 60 RLCRAFDEFP KHILGPSSAF GEGLXTRTTT TAIPPTPSXX YVYSAPEIAE PIRRRYRGVR 120 QRPWGKWAAE IRDPFKAARV WLGTFETAEA AAQAYDQAAL RFRGNKAKLN FPENVRLLSS 180 TAVPPPTQLS NSAPQNTLLS VATSSEPIVH SQAFHSSDEV PSTSRNLVSY SELVDMQRQP 240 MSIYYQMQWR SQNSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-23 | 114 | 175 | 4 | 66 | ATERF1 |
3gcc_A | 1e-23 | 114 | 175 | 4 | 66 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028950710.1 | 1e-177 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A498I0G1 | 1e-139 | A0A498I0G1_MALDO; Uncharacterized protein | ||||
STRING | XP_008362283.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 4e-30 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000186131 |