PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000183534
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 355aa    MW: 39548.6 Da    PI: 9.8518
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000183534genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.31.9e-39107167262
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                    ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkks+
  MDP0000183534 107 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKKST 167
                    6899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-24102159IPR003851Zinc finger, Dof-type
PfamPF027011.6E-33109165IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.096111165IPR003851Zinc finger, Dof-type
PROSITE patternPS013610113149IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MKSKNQDFGI MRSIKRNPLS LRTLMIPQKM NKNEFSKQNQ TKIPHRITQT ALCSDILGGI  60
VKTRTFLYFS PHRQSHKGSG EPEKPMEDHD MGSNGCTRSV LEKRARPQEQ LNCPRCNSTN  120
TKFCYYNNYS LTQPRYFCKT CRRYWTEGGT LRNVPVGGGS RKNKKSTSSS VSSKITIPDL  180
NPPTTLSHFS SSHQNPRVTH EGQDLNLGFN AIDAHYHGTT MENNNSTNSS SXPNLSAMEL  240
LRTGIASRGV NSYIPTQNMP DHHSNTLYPP SSAGFSLQEY KPTNLGFCVD GLGNRYGGDD  300
HGTVNGGRIL FPFGDHHLKQ ISSTAXHHEV LDHHQNKGQG NPTGYWNGLL GGGSW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.117820.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
UniprotTISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368735e-48BT136873.1 Lotus japonicus clone JCVI-FLLj-14C11 unknown mRNA.
GenBankBT1443335e-48BT144333.1 Lotus japonicus clone JCVI-FLLj-13E12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375423.10.0PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
SwissprotQ433852e-60DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A498KRK80.0A0A498KRK8_MALDO; Uncharacterized protein
STRINGXP_008343438.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.36e-56Dof family protein