PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000182176
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 363aa    MW: 39852.5 Da    PI: 8.3788
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000182176genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA611.5e-19147181135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++Cg+ +Tp+WR gp g+ktLCnaCG++y++ +l
  MDP0000182176 147 CQHCGADETPQWRAGPLGPKTLCNACGVRYKSGRL 181
                    *******************************9885 PP
2GATA49.65.4e-16282315235
           GATA   2 snCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    ++Cgt +Tp+WR gp gnktLC aC ++yrk g+
  MDP0000182176 282 QHCGTETTPQWRPGPHGNKTLCDACEVRYRKSGK 315
                    69*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.662141177IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-16141191IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.9E-15144179IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.75E-15144204No hitNo description
CDDcd002025.41E-14146194No hitNo description
PROSITE patternPS003440147172IPR000679Zinc finger, GATA-type
PfamPF003202.9E-17147181IPR000679Zinc finger, GATA-type
SMARTSM004013.4E-8278326IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-10282316IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.6E-14282315IPR000679Zinc finger, GATA-type
CDDcd002025.34E-11282330No hitNo description
SuperFamilySSF577165.23E-12283336No hitNo description
PROSITE profilePS501149.592283330IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MESLDSLDDI LNFHSDDAGA XDKAHDFKPS IAPSGVLCPD DPSRPFSQTE EGVEEELEWL  60
SNKDAFPAVE TFVDINLLIG QPAGIGTDKH QSPVSGARSK GRRRRESSSF PGTLEEHVFW  120
SQSNNCKKDD KTIVKRTTGM AMIGRVCQHC GADETPQWRA GPLGPKTLCN ACGVRYKSGR  180
LVPEYRPASS PTFSSKLHSN SHRKIMEMRK QKHGTGIFPG DSGEQLFSNQ AHKDSKDGRI  240
KAKQQGQQLG ENVSIAGFKR PCDGGQLSLE SKPCVILVGL GQHCGTETTP QWRPGPHGNK  300
TLCDACEVRY RKSGKLVPEY CPASSPTFSR ELHSNNLSKI YLISHCQNLE RNSQQAKTMG  360
SKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008368588.21e-146GATA transcription factor 1
RefseqXP_028952110.11e-146GATA transcription factor 1
RefseqXP_028952111.11e-146GATA transcription factor 1
STRINGXP_008362384.11e-146(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-40GATA transcription factor 1