PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000181940
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 748aa    MW: 83743.2 Da    PI: 5.4449
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000181940genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP78.69.2e-25116174159
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeek 59 
                    +Cqv++C +d++e+k yhrrh+vC ++++a++v ++g+++r+CqqC++fh ls+fDe+ 
  MDP0000181940 116 RCQVPSCGVDIKELKGYHRRHRVCLACANASTVDIDGESKRYCQQCGKFHVLSDFDEDC 174
                    6*******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-24110173IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.717114191IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-23115175IPR004333Transcription factor, SBP-box
PfamPF031104.2E-19117183IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MEIQPPLPSD DTSTVWEWGD LFDFTVDDDL SISWGSAEYP DPEVGPAPEH LLEDPNSNSS  60
RIRKRDPRLA CPNFLAGHIP CACPEIDAKM MELEEEEAGH GKKRVKTGRA PNGTARCQVP  120
SCGVDIKELK GYHRRHRVCL ACANASTVDI DGESKRYCQQ CGKFHVLSDF DEDCLQLSSQ  180
LNEEEELLES QGGQTPILCS VPESQNIRSD SGVSFMASGE TQMDARKHDS NNSLSPSNCD  240
NKSYSSMCPT GRISFKLYDW NPAEFPRRLR HQIFEWLASM PVELEGYIRP GCTILTIFIA  300
MPNFMWMKVM VLAILFLLED PVSYLHEFVI VPGKMLSGRS NILIYLNDMI FRVVKDGTSV  360
XKTKVEVRAP RLHYVHPTCF EAGKPMEFVA CGKSKTAVTF LVSFSGKYLE YDYSPPSSHS  420
QIDGDTASNL DHQFFQIQVP QTESDCFGPA FIEIENESGL SNFIPVLIGD KEVCAEMKTI  480
QERFDESLSL QGLHFSSRVS LSNSCEASSM RHTAFSDIIL DIAWLLKKPL SENFQQIMTA  540
SQIQRFNYLL NFLISIKSTT ILDKVLQNLE TLMAKMELNS ANNGSIDADM RLLQNYMNYA  600
RDLLCQKFES SGRLVKKEDL VSQSQTCFQN DGKLVAPFHC QDTEITVDGR LGVIVGSTFD  660
ERSETVPLLS KKAVGKANLI KELPSLAKRC TSGEVLXSRS GGMFLRFRPT LLVISATAIC  720
VGFCAVLIHP HKVGEFAVTI RRCLFDKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-26115172461squamosa promoter binding protein-like 7
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.15421e-135fruit| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008340872.20.0squamosa promoter-binding-like protein 7
TrEMBLA0A498HR470.0A0A498HR47_MALDO; Uncharacterized protein
STRINGXP_008340871.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.20.0squamosa promoter binding protein-like 7