PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000180343
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 448aa    MW: 51741.6 Da    PI: 4.4621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000180343genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.32.4e-1381272128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykv.ePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                    p+G++FhP+dee v +yL++kv+g +  ++ e+vi+++d+y + e +d+ +    +     +++++yfF+k + ++++g+ ++ a +  +W    +
  MDP0000180343   8 PVGYKFHPRDEESVGYYLHNKVRGPPfrFRDENVIPDIDLYGSmEARDIWNnnrgQ--DlgDDEDLYFFTKLKPASTKGTGSRVARNYRVWDLAWT 101
                    89************************55444568******9654999996323332..14367799****99988876543333333446763322 PP

            NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  ++ +++ + ++   e+  W+mhe+rl
  MDP0000180343 102 -------------EQREFTYAN-TKYXQENGCWIMHEFRL 127
                    .............223333332.22233455677777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-174153IPR003441NAC domain
PROSITE profilePS5100516.8787155IPR003441NAC domain
PfamPF023652.9E-118127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAPANDIPVG YKFHPRDEES VGYYLHNKVR GPPFRFRDEN VIPDIDLYGS MEARDIWNNN  60
RGQDLGDDED LYFFTKLKPA STKGTGSRVA RNYRVWDLAW TEQREFTYAN TKYXQENGCW  120
IMHEFRLDRK LAMRIKSNSR TSDGDEYVVC XVQKNYDRKR NVDDHEETRV VESQRNKIQR  180
QFENIDESYA TPLSSEVVDK VNTDHCPQKQ QPQQEQQTNL NANSTSSSIG VTNVDQRKYD  240
YYEDQPKYYE PQNSHVSPIS SVVVEVIVDX YYNQQQLELC NVTEFPQYYN DSQEPMARPD  300
DFVAEAACPT MPSSLGMANQ EEHLQHNGFV NNGMDLPQYD YSSTQDPSNG TXFCHYDPPQ  360
TATTGFANQP HHIVTQDQPN YFVADPTVGS SLASQANIDQ NHPVMRDKNQ HPLLNFDYSQ  420
FYEVDGDDIM IVLDDLWNNM VQPAAVLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385925.12e-94NAC domain-containing protein 41-like
TrEMBLA0A498K7790.0A0A498K779_MALDO; Uncharacterized protein
STRINGXP_009357365.11e-178(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-13NAC domain containing protein 38