PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000178668
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 580aa    MW: 66248.3 Da    PI: 5.0097
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000178668genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015289308322
                    ETTTTEEESSHHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFsrksnLkrHirt 22 
                    C  Cgk F++  + k+H ++
  MDP0000178668 289 CVVCGKKFKSEKQWKNHEQS 308
                    9****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.44E-244112IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1105.1E-24581IPR001623DnaJ domain
SMARTSM002712.9E-23769IPR001623DnaJ domain
PROSITE profilePS5007619.673877IPR001623DnaJ domain
CDDcd062578.15E-18866IPR001623DnaJ domain
PfamPF002268.0E-22974IPR001623DnaJ domain
PRINTSPR006252.0E-151028IPR001623DnaJ domain
PRINTSPR006252.0E-152843IPR001623DnaJ domain
PRINTSPR006252.0E-154969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.67E-11279322No hitNo description
SMARTSM004519.3E-4284318IPR003604Zinc finger, U1-type
SMARTSM003552287311IPR015880Zinc finger, C2H2-like
PfamPF121711.3E-9288312IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280289311IPR007087Zinc finger, C2H2
PROSITE profilePS501578.829550579IPR007087Zinc finger, C2H2
SMARTSM003559.4550574IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280552574IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MAASDRRCHY EVLGLARDCS ADEIRSAYRK LALQRHPDKL VQSGLSQSEA TAQFQELAHA  60
YEVLSDPKER AWYDSHRSQI LFSDRRSAAS GSGSGIPDLF SFFSTTVFSG YSDSGRGFYK  120
VYSXVFNKIY ANELNFARKL GLGLDTVAEA PAMGNLESPY VQVTAFYNYW AGFCTVMDFC  180
WEDKYDEENK KERKKAKREF NXTVRGLXDF VKKRDKRVID MMLKKEEERV RKREEERERK  240
KKLEKEKLER AMAYEEPEWA KVEEEEGGNG VEELEEXEEE XXRRKEXYCV VCGKKFKSEK  300
QWKNHEQSKK HRDKVAEYXE SIGEDLELDD EEVLEGEGEE RGELGDVDEL GQEIREGLKI  360
GEEEDGAGVS DQEDELHEFG GENGNEKVDE ALGLDGDEXE DEMGVLEAMV AGRKIKKNVA  420
FWVEREDKDD DDAEFMEYNN RKSARRKGGA RKERSKKSGG EANNVDKSGN NGXQSEESNE  480
QDNSNMKEST SHSVVENESX DKGDEHLARK KKSSSKAVDK KEKVKKVVND KLKNSSNGKK  540
SKGALKNTSN ACDTCGEEFE SRNKLHMHLG DTGHAKLKYR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189197KKERKKAKR
2228240RVRKREEERERKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393226.20.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-175JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A498I5J00.0A0A498I5J0_MALDO; Uncharacterized protein
STRINGXP_008393226.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-121DNAJ heat shock N-terminal domain-containing protein