PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000175375
Common NameAP2D17, LOC103410495
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 274aa    MW: 30863.6 Da    PI: 8.2027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000175375genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.2e-20135184255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  MDP0000175375 135 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFTTAEDAARAYDKAAIEFRG 184
                    59*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-37135198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-33135192IPR001471AP2/ERF domain
PROSITE profilePS5103225.132135192IPR001471AP2/ERF domain
PfamPF008472.4E-13135184IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22135193IPR016177DNA-binding domain
CDDcd000185.92E-34135192No hitNo description
PRINTSPR003677.2E-12136147IPR001471AP2/ERF domain
PRINTSPR003677.2E-12158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MQYPYKRLKL SDTQPDDPAT LQFQSPPPPH RLTQDQEYAV MVSTLRNVVA GTATSATMDL  60
NSLLPSHATY SPRYTTSTNC YSNTLLAPSD LDTCHVCKIK GCLGCILFPP PPAAHSQEEK  120
GGNYKKGPKK RVKKNYRGVR QRPWGKWAAE IRDPRRATRV WLGTFTTAED AARAYDKAAI  180
EFRGPRAKLN FPFPDTTLLA QESNSTQPPH QQQQQVVTEQ GNKNVEFSRE VETTAILKEN  240
ELWEKIGEEE FQQWMTMLDF ATDNSSDSGN AHSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-24134193161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-24134193464ATERF1
3gcc_A6e-24134193464ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.117330.0root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324410.0GU732441.1 Malus x domestica AP2 domain class transcription factor (AP2D17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009350374.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLD5L1010.0D5L101_MALDO; AP2 domain class transcription factor
STRINGXP_008347410.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-36redox responsive transcription factor 1
Publications ? help Back to Top
  1. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]