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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | MDP0000173434 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 198aa MW: 21970.8 Da PI: 6.5214 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 39.2 | 1e-12 | 28 | 111 | 157 | 244 |
GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
+l +tg+rL++fA+ l+++fef++ + + +++l+ + ++++ +Eal n++lql++l+de+ ++ + Lkl ksl+ ++v++ +
MDP0000173434 28 SLFTTGNRLREFAKLLELHFEFEL-ILTPVNELDESCFQLELDEALDANFMLQLYNLFDEKPTVVN---YALKLAKSLKLQIVTLGDG 111
56789******************9.799************************************99...9**************9875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 10.903 | 1 | 198 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 3.6E-10 | 28 | 111 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 198 aa Download sequence Send to blast |
MQIIAITHIF TSSEFMKLVI LGISLLTSLF TTGNRLREFA KLLELHFEFE LILTPVNELD 60 ESCFQLELDE ALDANFMLQL YNLFDEKPTV VNYALKLAKS LKLQIVTLGD GGEKTIADLL 120 FSLKALRSSD RENILSKSLS PLAGCTALFT SVAVVTIPVN YLGNLTAPMS ILKAVSKLLV 180 SDSFSIMRQS SQRRSKSC |
| 3D Structure ? help Back to Top | ||||||
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| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 7e-19 | 20 | 110 | 151 | 241 | GRAS family transcription factor containing protein, expressed |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G66770.1 | 6e-18 | GRAS family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | MDP0000173434 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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