PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000173048
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 477aa    MW: 53237.3 Da    PI: 9.315
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000173048genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1432.3e-441603062131
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesssss 81 
                     gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+aik+l +                 +          ++++s
  MDP0000173048 160 SGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKTAIKDLKQHllvspkedysstnggaT----------AKVNS 245
                    69**************************************************************99887665554443221..........11111 PP

            TCP  82 asnsssg............kaaksaa.kskksqksaasalnlakesrakarararertrekmr 131
                     +  s +            +aak +   +  ++k+  + + +a+esr +arararertrekm+
  MDP0000173048 246 FE--STTgdvaskimepnsSAAKGDIsIGLAREKKYRKLSVVARESRVEARARARERTREKMM 306
                    11..1112233444455545666666345555555555666667*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-41161306IPR005333Transcription factor, TCP
PROSITE profilePS5136937.183162220IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.048287304IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MFPSSSTTSN TQXPFLCDDN HTNGIIDDFH QNPNSISSHG GYHQYYSQYY YSDDQQQQQA  60
PDFLEHDGML LSYLLSQQQL LIDSSSTTNV ATHSNHXRAH SSAEIXIVDS NSNKTMELIN  120
RADEITVIPA ADSQIKKNNV KMNGEGGGEK KAKFARKRAS GKKDRHSKIY TAQGPRDRRM  180
RLSLQIARKF FDLQDMLGFD KASKTIEWLF TKSKTAIKDL KQHLLVSPKE DYSSTNGGAT  240
AKVNSFESTT GDVASKIMEP NSSAAKGDIS IGLAREKKYR KLSVVARESR VEARARARER  300
TREKMMRIRG FDQDHQSTKQ SHKHQEQQNP NELFETAGMM NSMMMSMNRP NDGQKIVGRT  360
SSNCGGAERL FLNFDFSRHA EASGANSEDC DFPGNWGAIN NTKNIITGNV LQVEQNPTSY  420
PKQQNPSSIF GTGTQEQNPN SIFLTTLAKA QDQNSTTSSN FAINTNISTL QPLFTGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389320.30.0transcription factor TCP18
TrEMBLA0A498I7Y30.0A0A498I7Y3_MALDO; Uncharacterized protein
STRINGXP_009336654.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-30TCP domain protein 12