PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000172931

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 585aa MW: 63825.3 Da PI: 6.2978

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000172931	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	69	89	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk Fs+ L H+r H MDP0000172931 69 CEVCGKGFSSGKALGGHMRIH 89 *******************99 PP
2	zf-C2H2	17	1.6e-05	143	164	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk F++ +L H+r+H MDP0000172931 143 VCCVCGKNFPSMKSLFGHMRSH 164 6********************9 PP
3	zf-C2H2	10.7	0.0017	412	434	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C k+F+++ L H+++H MDP0000172931 412 YKCNLCVKCFPSHQALGGHMSSH 434 9********************99 PP
4	zf-C2H2	14.3	0.00012	479	501	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k+F++ L H r+H MDP0000172931 479 HQCKICNKTFPTGQALGGHKRSH 501 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.15	67	89	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.221	67	94	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.39E-8	68	89	No hit	No description
Pfam	PF13912	1.1E-6	69	89	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.1E-5	69	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.39E-8	137	164	No hit	No description
SMART	SM00355	0.092	142	164	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.349	142	169	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.7E-6	144	166	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	144	164	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.5E-6	411	435	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.076	412	439	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.034	412	434	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.37E-5	412	434	No hit	No description
PROSITE pattern	PS00028	0	414	434	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.37E-5	474	501	No hit	No description
Pfam	PF13912	5.0E-13	478	502	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0081	479	501	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.806	479	501	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	481	501	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MDIQHKETRF PPLAARYQEP TPAKKPSREE MENNNGGLFL ELKVAKPEPL DQNPQNSSAX 60 PRPQFTRFCE VCGKGFSSGK ALGGHMRIHI QADRELFNQS XKNMISSKPK ISKPNNSDVG 120 SSNAGGVVGI GGNSNSISDX KPVCCVCGKN FPSMKSLFGH MRSHPEREWR GIQPPPAAKN 180 SSSSTLSDAV PDQSEKKDQD GQIDSDEMFF ASKSSALDLS KTLPKWSQTA RRGRKSGSTG 240 LESNSDQSVS GLDSRSPRTV EEDEEQMKEA VHDLLLLAQA NPLEGGGADD TMCEATNSNF 300 LITANQDGEX GLPCHGYTAT ATVGSTNKRK GSPSEVERSE KKWYDEYGGG FGQEKSTVKN 360 FLKLGLMEEE NIGNHNNMED ELSDSQNSES IAVMRRNRRK MKLVDLEGRL RYKCNLCVKC 420 FPSHQALGGH MSSHNKLKGI AVAHPSMEDQ SAPADVSXGE DRVHDDEAER VALDHQQHHQ 480 CKICNKTFPT GQALGGHKRS HWNGPTEQHQ QQVVEGPPEQ LQQQLQAQSS QNIAGVGGGR 540 RVLDFDLNEL PPMEEDDQQG EGVGYQYGGA AAAGCAPSSY NSVSN

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MDIQHKETRF PPLAARYQEP TPAKKPSREE MENNNGGLFL ELKVAKPEPL DQNPQNSSAX  60
PRPQFTRFCE VCGKGFSSGK ALGGHMRIHI QADRELFNQS XKNMISSKPK ISKPNNSDVG  120
SSNAGGVVGI GGNSNSISDX KPVCCVCGKN FPSMKSLFGH MRSHPEREWR GIQPPPAAKN  180
SSSSTLSDAV PDQSEKKDQD GQIDSDEMFF ASKSSALDLS KTLPKWSQTA RRGRKSGSTG  240
LESNSDQSVS GLDSRSPRTV EEDEEQMKEA VHDLLLLAQA NPLEGGGADD TMCEATNSNF  300
LITANQDGEX GLPCHGYTAT ATVGSTNKRK GSPSEVERSE KKWYDEYGGG FGQEKSTVKN  360
FLKLGLMEEE NIGNHNNMED ELSDSQNSES IAVMRRNRRK MKLVDLEGRL RYKCNLCVKC  420
FPSHQALGGH MSSHNKLKGI AVAHPSMEDQ SAPADVSXGE DRVHDDEAER VALDHQQHHQ  480
CKICNKTFPT GQALGGHKRS HWNGPTEQHQ QQVVEGPPEQ LQQQLQAQSS QNIAGVGGGR  540
RVLDFDLNEL PPMEEDDQQG EGVGYQYGGA AAAGCAPSSY NSVSN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018500766.1	0.0	PREDICTED: hypermethylated in cancer 2 protein
TrEMBL	A0A498IT11	0.0	A0A498IT11_MALDO; Uncharacterized protein
STRING	XP_008384635.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9737	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	3e-19	C2H2 family protein

Link Out ? help Back to Top
Phytozome	MDP0000172931