PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000171492
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 532aa    MW: 58864.7 Da    PI: 8.3344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000171492genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.4e-0683105123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  MDP0000171492  83 FVCEICNKGFQREQNLQLHRRGH 105
                    89*******************88 PP
2zf-C2H212.50.00046159181123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H +++
  MDP0000171492 159 WKCEKCSKRYAVQSDWKAHSKVC 181
                    58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.1E-882105No hitNo description
SMARTSM003550.003483105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.07483105IPR007087Zinc finger, C2H2
PfamPF121712.9E-583105IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM00355160124154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4147179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.1E-8154179No hitNo description
SMARTSM00355130159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MVDENMSNLT CASGDLSASN SSIRNESSSA GTVYPQHSAS STQIQQQQAP PPPKKKRNLP  60
GNPDPDAEVI ALSPKSLMAT NRFVCEICNK GFQREQNLQL HRRGHNLPWK LKQRTGKEVR  120
KKVYLCPEPT CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKRYAV QSDWKAHSKV  180
CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQENSTSTAA ARSAMPASIN PILSSLPHIH  240
SHGLQALSAV KREQDQHQHQ HQHQQHQHPQ HLPPWLSCLP EGGEAASLPT MNLSASPLFS  300
TSSFQQYYSF DQNPNPSGSS TTLLPDNFQV QQTLAPPHMS ATALLQKASE MGATISKPSP  360
SPYFLKPPTH QSHQAXMSNE TSRDQAILLD DGFGNNEXKS SLLHDMMMMS GSQGFHHDRH  420
QVSSSSFGDH PQQQQAFNGI MVDGNFVEIN NNNNPPQNYN KPRSTDNNNE GLTRDFLGLR  480
APFSSAASHG GHGDFFSINM AGLDHHHVST SSPAAYNNNG PQNDQNQTSW QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32155215363Zinc finger protein JACKDAW
5b3h_F1e-32155215363Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109121KLKQRTGKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.235900.0leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028962595.10.0protein indeterminate-domain 7-like
TrEMBLA0A498J9N10.0A0A498J9N1_MALDO; Uncharacterized protein
STRINGXP_008377690.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-108C2H2-like zinc finger protein