PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000170583
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 556aa    MW: 62645.5 Da    PI: 7.2635
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000170583genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.5e-06326226
                   -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                   k++lC+ffa  G C  G+ C F+H+
  MDP0000170583  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                   99****6666.*************5 PP
2zf-CCCH21.44.6e-073454526
                   --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                   +C f+++ G C +G+rC++ H+
  MDP0000170583 34 ICTFYQK-GACAFGNRCRYEHV 54
                   7******.***********997 PP
3zf-CCCH19.91.3e-06142165226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    ++++C+ fa+ G C++G++C+ +Hg
  MDP0000170583 142 DRAICS-FAAAGNCPRGEKCPHIHG 165
                    588999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9012956IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-53253IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-43454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432140167IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF578507.61E-13199273No hitNo description
Gene3DG3DSA:3.30.40.102.4E-9204269IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001623.81E-4208268No hitNo description
SMARTSM001841.4E-7209266IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.43209267IPR001841Zinc finger, RING-type
PfamPF000975.6E-7209266IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180233242IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.347296325IPR000571Zinc finger, CCCH-type
SMARTSM003560.054296324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKAS PNNICTFYQK GACAFGNRCR YEHVKASRAQ  60
SFGSSSSTNS QPSLAIDSAS LALPARTLTS GVSLAPLSLS ELSASSSPFL PPSKPAWNCS  120
LDGDYDDDES SVGETRNTRP EDRAICSFAA AGNCPRGEKC PHIHGDICPS CGKHCLHPYR  180
PLEGEEHMKI CEEKQKQLEA LKCSQEIECS VCLERVLSKP TVAERKFGIL SECDHPFCIS  240
CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY KSKEEKQEIV DSYKARLRSI  300
DCKHFDFGNG NCPFGTSCFY KHTVKPGSYV WKFHRPPPRR PPPRRPPPRR YDIAPMDVIF  360
HMFEHLEELD DYIFEDLENE DLNSWERESL MQMDLPPIVF IGTHAYRDGC LEEVALRHLG  420
NEDGQTVIAT NIRLSDFLAD LHIRIFLQQE QMRSSHAGFC NCKWNTRVVC KDGYPVVGEK  480
TCSVVVNYMF SSDESSIVVL VVPLLGMASS ACRWLEPVFQ FIVYCFISPV RTKPAFANAF  540
TKYNITLRTQ PASEVL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.117650.0fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375163.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
SwissprotE0X9N41e-147C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLM5XJS30.0M5XJS3_PRUPE; Uncharacterized protein
STRINGXP_008375161.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-133C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]