PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000163471
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 345aa    MW: 37331.3 Da    PI: 7.5695
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000163471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.56.4e-33111168260
    ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                    + vrY+eClkNhAa++Gg+++DGCgEfmps g+egt++alkCaAC+CHRnFHR+ev+ e
  MDP0000163471 111 KVVRYRECLKNHAANIGGNVFDGCGEFMPS-GQEGTMEALKCAACDCHRNFHRKEVDGE 168
                    579**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-23112166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.6E-30113165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-30114165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.786115164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.39E-18250314IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-29252314IPR009057Homeodomain-like
TIGRFAMsTIGR015655.5E-28253310IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDFRAQDNEM RTSGSLSYAH LNTKESSPSP AAAADHQQKR RVGIHNGTGN YGSATAPHHQ  60
HQTLDNHHPA AIPLQPLIRD PDPDRALSGT PVAPHEAGVG GGGGGPKSLA KVVRYRECLK  120
NHAANIGGNV FDGCGEFMPS GQEGTMEALK CAACDCHRNF HRKEVDGETA AFSPGSRRSS  180
IMLSPLQLPP PLPSPSSALH HHHHHHHHQK YAMPPIVQPV NVAFGSSGGG TESSSEDLNA  240
FEGGTVPPFA LSKKRFRTKF TVEQKERMME FGEKVGWRIQ KQDEEEVERF CAEVGVKRQV  300
LRVWMHNNKN TIKKQGDVTA TTNAIAXSFK NVEGEGGEGG AAAED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-252523111675ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388053.20.0zinc-finger homeodomain protein 5
RefseqXP_028962470.10.0zinc-finger homeodomain protein 5
SwissprotQ9FRL56e-68ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A498J6Q90.0A0A498J6Q9_MALDO; Uncharacterized protein
STRINGXP_008357201.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.11e-64homeobox protein 33