PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000163338 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HSF | ||||||||
Protein Properties | Length: 222aa MW: 25366 Da PI: 8.4728 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 87.1 | 2.3e-27 | 14 | 144 | 2 | 102 |
HHHHHHHHHCTG......GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT................. CS HSF_DNA-bind 2 Flkklyeilede......elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks................. 74 Fl+k++++le++ ++++sw+ +g+ f+v+ +++f++ +LpkyFkh+nf+SF+RQLn+Y + + ++ + MDP0000163338 14 FLSKTFDLLEENdggdggGKRNIVSWNVEGTGFIVWSPDDFSELLLPKYFKHNNFSSFIRQLNTYYLPGLFNYFSQAPTlvrglailtcdpnpqtl 109 9*********8777777799*********************************************98877777766555778899**999999988 PP .......XTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 .......kekiweFkhksFkkgkkellekikrkks 102 ++k w+Fkh++F+kg +e+l +i rkk MDP0000163338 110 kqgfkktSRKEWQFKHEKFQKGCREMLVEITRKKC 144 877765449***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 9.2E-30 | 4 | 78 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.2E-28 | 10 | 142 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.94E-20 | 10 | 142 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.6E-24 | 14 | 142 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-6 | 58 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-6 | 71 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 9.2E-30 | 112 | 137 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAEKSSRTRS TAPFLSKTFD LLEENDGGDG GGKRNIVSWN VEGTGFIVWS PDDFSELLLP 60 KYFKHNNFSS FIRQLNTYYL PGLFNYFSQA PTLVRGLAIL TCDPNPQTLK QGFKKTSRKE 120 WQFKHEKFQK GCREMLVEIT RKKCEPSAFP VYLKASEESG STSTAVVAAE ENNCLLLMEE 180 NKNLRKQKLE LQVQIAQFKT LESKLLDCVA QCMDDHQNKV RC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ986525 | 1e-38 | FJ986525.1 Corylus avellana clone B728 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008383745.1 | 1e-125 | heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A498IXH7 | 1e-113 | A0A498IXH7_MALDO; Uncharacterized protein | ||||
STRING | XP_008383744.1 | 1e-125 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 6e-28 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | MDP0000163338 |