PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000163159 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WOX | ||||||||
Protein Properties | Length: 248aa MW: 28534.4 Da PI: 8.5649 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 11 | 70 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++ ++ql Lee+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ MDP0000163159 11 SRWCPAPKQLMLLEEMYRAgIRTPNASQIQHITAQLsfygKIEGKNVFYWFQNHKARDRQ 70 8*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 114.3 | 6.2e-37 | 9 | 71 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P p+Q+++Lee+y++G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk MDP0000163159 9 SSSRWCPAPKQLMLLEEMYRAGIRTPNASQIQHITAQLSFYGKIEGKNVFYWFQNHKARDRQK 71 689***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.977 | 6 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.0E-4 | 8 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.45E-10 | 11 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.4E-16 | 11 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00331 | 12 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 12 | 70 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSPAANSSSS SRWCPAPKQL MLLEEMYRAG IRTPNASQIQ HITAQLSFYG KIEGKNVFYW 60 FQNHKARDRQ KLRRKLCKQL QQQQLLYHHH NYHNYRNCHY EQQLNQQTFL GYLETPPPVP 120 SALHHKQLYT CHHHNNYSST GFLPPQVGVE DAMINYTWKM EIPEKVEMEK PVMSMYGREW 180 MMMMMMDVSP PSPCCTSSSS STTTTTTTTT STPPLKTLQL FPITATDLKE ESTASHSALS 240 SSTLTDNH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008358043.2 | 1e-146 | WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A498KAV8 | 1e-144 | A0A498KAV8_MALDO; Uncharacterized protein | ||||
STRING | XP_008358043.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10632 | 29 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 1e-32 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000163159 |