PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000162939
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 376aa    MW: 40115.9 Da    PI: 6.7541
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000162939genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001788107221
                    EETTTTEEESSHHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                    +C+ Cgk+F ++  L  H+r
  MDP0000162939  88 PCTECGKTFWSWKALFGHMR 107
                    5******************8 PP
2zf-C2H211.90.00071275295121
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                    +kC+ Cg++Fs+   L  H+r
  MDP0000162939 275 HKCSVCGRVFSSGQALGGHMR 295
                    79************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01787109IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.72387114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-888109No hitNo description
PfamPF139121.7E-789111IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.2E-489109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.23E-8194221No hitNo description
PfamPF139121.2E-9198222IPR007087Zinc finger, C2H2
SMARTSM003550.47199221IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242199226IPR007087Zinc finger, C2H2
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
PfamPF139125.8E-13275299IPR007087Zinc finger, C2H2
SMARTSM003550.0036275297IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492275297IPR007087Zinc finger, C2H2
SuperFamilySSF576674.45E-6275300No hitNo description
Gene3DG3DSA:3.30.160.601.8E-4275297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MNNTPDLDFR FPISPPTHQD AVVPAAPATA TAASSSSTCF TASDRTHQNP RKKRSKLIRL  60
DNPTAPNKVS RPKYAKKPDP SAPKITKPCT ECGKTFWSWK ALFGHMRCHP ERQWRGIEPP  120
PNLRRPVSSN IPLSELGLAM GEEDHEAASS LLMLSSGITS GTSNEIIIST AATQSVSNTN  180
LQGALEVFDG CNSNNSGRFE CSSCKKVFGS HQALGGHRAS HKNVKGCFAI TRSDGEVDQD  240
HHHHNGDGGG DXGDGDGDED VMDENHMDLG SSLGHKCSVC GRVFSSGQAL GGHMRCHWDK  300
GDETQLGFGF ELGLGFNLQH PCETSKGLFL GQNSGXGGGL DLNLPAAAAA SASHTTEDDH  360
QHYSSSGLTL DLRLGI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028965043.10.0zinc finger protein ZAT3
TrEMBLA0A498IWK00.0A0A498IWK0_MALDO; Uncharacterized protein
STRINGXP_008382475.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF6667710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-74C2H2-like zinc finger protein