PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000162019
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 537aa    MW: 61084.7 Da    PI: 8.5092
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000162019genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.23.8e-12219261749
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF   7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                     +++v+fskRr g++ KA+E +   da++a++++s+ g+ y +
  MDP0000162019 219 NRKYVSFSKRRYGLFSKASEFCLKFDAQIAILVLSPAGRPYSF 261
                    5789**********************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-8191264IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-15219290IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.988220265IPR002100Transcription factor, MADS-box
PfamPF003191.2E-13220261IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MCQPYNPTQS QPAVGPKKNL ELFEKDDELH HKILIELEGE EMVKMLHKFW KDGRRSVEFL  60
RLKSRGSHSN NTDTIPNLTI TTYQIRQVYT ATGKFKEDFP NKKQAVSYCN QVKNQPHYIY  120
TERGHREGCS YEHTQTAPAI IQSAIQNKTQ RLIDNTLFIS QPHISILPSM SRRRAGLVIK  180
LESLTSIVPS MSRRRAGRVI KLESQEGVDP RVVQQKELNR KYVSFSKRRY GLFSKASEFC  240
LKFDAQIAIL VLSPAGRPYS FGHSSVDAVL NRYFKIAQAP STSRVTEDDQ EEQKDKIQVL  300
RKQLESHKKR KREEEIAEKN KVAKVKESVE KELQTCKTVE ELVAFKQKYS VLHENINKRL  360
KKSQSPISKR QCINRDIVLE DNNAQHVSIR PILISKDTLP KTTLTTVGDD HDVGNGNSND  420
NGNGKGSFSW NAEDLENFLL RQDVEDIGGV VDETGYAAML NYFIGEDGND PNGAVDVSPA  480
EHVVFPPALK APPFDPVGSS DFTQHNISDD AANRYYGYFE DIINNSYSHQ DTSFNFN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340228.10.0PREDICTED: MADS-box transcription factor 50-like
TrEMBLA0A498IN381e-151A0A498IN38_MALDO; Uncharacterized protein
STRINGXP_008344790.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1884856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-16AGAMOUS-like 61