PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000160600
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 463aa    MW: 51894.8 Da    PI: 6.7919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000160600genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11288333454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N +f  Lr ++P+       +++Ka+ L  Av YI++L
  MDP0000160600 288 NHVEAERQRREKLNRRFYALRAVVPNV-----SRMDKASLLSDAVVYINEL 333
                    799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.4E-2822191IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.23E-17282349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-13282338No hitNo description
PROSITE profilePS5088816.393284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-9288333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-16288346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-14290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEGTNSSCSS YNFGQENSPT LQRLQFIIQN RPVRWVYSIF WQASSKDSDD LVSLSWAGGH  60
FRSTRDLASI QSYNKANVFE VVERKKGISR EVEALFYEGM DLDGGDVTDA EWFYFYTDSL  120
TQSFTAGHGN SNILGRDHEL QFYECERVKK ARMHGIQTLV CIATSCGVVE LASLDAIKVD  180
WDLVQISKSL FGSKNNNNMV SKQLSSSRED HVLVPLLESG MFSGAEQRDW TTQGGTKEVP  240
PVTMGGSSDS GPSDSVGNFT SENMENIRLK KRGRSSNREX GRSETPINHV EAERQRREKL  300
NRRFYALRAV VPNVSRMDKA SLLSDAVVYI NELKARVEQL EAKIQAQHLK PVVDIGGQTT  360
SSIIDPHQTR PRLSSSYNNR AAGAMEIEXK IVGSEAMIRV QCPDCDYPNA RLMNALKDLE  420
LQVYHASISS VKGLMLQDVV ARVPQGFTSE EALRIAIINR WYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-25281358281Transcription factor MYC2
5gnj_B3e-25281358281Transcription factor MYC2
5gnj_E3e-25281358281Transcription factor MYC2
5gnj_F3e-25281358281Transcription factor MYC2
5gnj_G3e-25281358281Transcription factor MYC2
5gnj_I3e-25281358281Transcription factor MYC2
5gnj_M3e-25281358281Transcription factor MYC2
5gnj_N3e-25281358281Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268274LKKRGRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.257380.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346662.20.0transcription factor MYC2-like
TrEMBLA0A498JRF50.0A0A498JRF5_MALDO; Uncharacterized protein
STRINGXP_008346662.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-58bHLH family protein