PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000158195
Common NameC2H2L4, LOC103451499
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 604aa    MW: 64625.3 Da    PI: 9.5217
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000158195genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-057799123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C+ C+k F r  nL+ H r H
  MDP0000158195 77 FICEVCNKGFQREQNLQLHRRGH 99
                   89*******************88 PP
2zf-C2H213.10.00029153175123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H +t+
  MDP0000158195 153 WKCEKCSKRYAVQSDWKAHSKTC 175
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-67699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.93E-77699No hitNo description
SMARTSM003550.00527799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.997799IPR007087Zinc finger, C2H2
PfamPF121713.0E-57799IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM00355150118148IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-5141174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.93E-7148173No hitNo description
SMARTSM00355130153173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MAASSSSGAP LFGIREEDQN QKMRQQHSST TPTSSTAAPA APPQKKRRNQ PGTPSKTDPE  60
AEVVALSPKT LMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKTT KEPKRKVYLC  120
PEPTCVHHDP SRALGDLTGI KKHYFRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY  180
RCDCGTLFSR RDSFITHRAF CDALAQESAR HPPSLTTIGS SLYGGGSLSN TGLGLSHQVV  240
GPPHQLSSLD HSNQPSDILR LGGSSGAAAA DRAGQFDHLL SSPSMGSSFR PAQSSAASFF  300
MTGASDHDQS NQQQYHDQDK SFHGLMQFTH HSPHQHHSGA GTNLFNVPFV SNSTNSNSAS  360
NSXSLISPNH FNTNANGSAX GGGNEVSNNL FAGHIMGGGD HMSSGVPSLY SNNGNSQQQA  420
ISSHMSATAL LQKAAQMGSN TSNNNNTTSL LRSFGSSSST TTKPDRPGTL VPSSLGRMFG  480
SDQTDQSHLQ DLMNSFASGG GGSSIFGNAA FGRYDASANR AINMEDAKLQ QHIGLNNIGG  540
GSDRLTRDFL GVGQVVRSMS GGFSHQRSEQ QHGGMEMLSS LDSESNXAAA APSTQSFGGG  600
GNFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33149210364Zinc finger protein JACKDAW
5b3h_F1e-33149210364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280886.10.0zinc finger protein MAGPIE-like
SwissprotQ9ZUL31e-142IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLD9ZIU00.0D9ZIU0_MALDO; C2H2L domain class transcription factor
STRINGXP_008360021.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-125indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]