PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000157940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 32327.9 Da PI: 8.4884 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.6e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl MDP0000157940 14 RGPWSNREDTLLTQYIEAHGEGQWRSLPEKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l MDP0000157940 67 RGNITSDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.654 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.05E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.928 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.08E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGRXPCCSKV GLNRGPWSNR EDTLLTQYIE AHGEGQWRSL PEKAGLLRCG KSCRLRWMNY 60 LKPDIKRGNI TSDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLIXEG 120 TDPNTHKKLS EPIAKENKRR ENQSCKNRNN KKEMVKTMMK SKTKTGQHVE PQKPKVHLPK 180 PTRITSFLSL PRNDSFTSST TVTTASSIQD LNGGGGGAFG VNPWCNNGVV LCVGDPDQDP 240 INSSADGGDD HSLENLYEEY LQALLTDHHH DHQNQLELDS FAESLLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 12 | 116 | 5 | 108 | B-MYB |
1h8a_C | 4e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.23655 | 0.0 | fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ909759 | 0.0 | KJ909759.1 Malus domestica MYBPA1-like transcription factor (MYBPA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008352872.2 | 0.0 | myb-related protein 308-like | ||||
Swissprot | P81393 | 1e-66 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A498KPP7 | 0.0 | A0A498KPP7_MALDO; Uncharacterized protein | ||||
STRING | XP_008352872.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-68 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000157940 |
Publications ? help Back to Top | |||
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