PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000157639
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 498aa    MW: 55594.6 Da    PI: 7.9685
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000157639genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.9e-096490127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   ++++ C++f+rtG Ck+ ++Ck++H++
  MDP0000157639 64 PGQPDCSYFLRTGDCKFKSNCKYHHPK 90
                   5789*********************96 PP
2zf-CCCH33.56.9e-11112135326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    + +C +++r+G+Ck+G+ CkF H+
  MDP0000157639 112 QNICTHYSRYGICKFGPACKFDHS 135
                    679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-46390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3526391IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-66590IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-56891IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6107135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446109137IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4109136IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8112135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4114136IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MMIPPPQGVS SQNSEWNGCR APAYIPESSM PARPPYMMNN SVTETNVYKQ YPLQXQVEEF  60
PERPGQPDCS YFLRTGDCKF KSNCKYHHPK TQTAVAPLFT LSDKGLPLRP DQNICTHYSR  120
YGICKFGPAC KFDHSSHISS STTSGPDHQL PYGDWATTNG AGIAGSRSGT DASVVYRTCC  180
GVCVVCCMSW HRRGPVKVTV NSXHISQRIS XLRFMFPLQR RKRCSGXGTV ASASKYMTNP  240
ATQFQPPSPP AQNLPMLPTG VLQPVSFTEL VEIYRYYRSG LQSEFLEGVA VPLNPINNNR  300
VDDQSGHPPS IPSPAPSDLD PEILELIRTL DPAVIEWIRN PDPAFLDEIR KSRELSLKEK  360
EDKEGKERET QEETKKERES EKSESGSGGG GNGNGGEVVK EVVEESSTSK RSRRRKNKLM  420
KVSKDKAMQG EELAEKQDQT ESKEIIVGDF VLEVSNDKAK PREGLAEKQD QTENKKVSKD  480
KAKQREELVE KQVQTESK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.33371e-151cell culture| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498JJL41e-153A0A498JJL4_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.13e-50C3H family protein