PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000155667 | ||||||||
Common Name | HSF4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HSF | ||||||||
Protein Properties | Length: 276aa MW: 30968.9 Da PI: 5.9498 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.9 | 2.4e-36 | 26 | 118 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+y++++d++++++isw+++g+sfvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k+ll++i MDP0000155667 26 FLIKTYQLVDDPSINDVISWNDDGSSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVGLDR---------WEFANDCFQRGQKRLLCEI 112 9****************************************************************999.........******************* PP XXXXXX CS HSF_DNA-bind 98 krkkse 103 +r++s+ MDP0000155667 113 QRRRST 118 ***975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.7E-58 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.9E-38 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.78E-36 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.3E-32 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-20 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-20 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-20 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MAPTPVEPNG ESTSGESLQR ALPTPFLIKT YQLVDDPSIN DVISWNDDGS SFVVWNPTVF 60 ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVG LDRWEFANDC FQRGQKRLLC EIQRRRSTPL 120 APPVASAWAV PAAKPMMSPS NSGDEQVISS SSSPNGAPSK LMQENERLRK ENMHLTKELA 180 EVKTLCNSIF SMVSNYACSQ WESGFPELKP LDLIPGKRFS VKGEKEEEEE ARLKLFGVAL 240 GAKRAREASA DGVEEDETDL RLQPSERLLV GSYGRY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-24 | 26 | 115 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-24 | 26 | 115 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-24 | 26 | 115 | 29 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.13880 | 0.0 | bud| fruit| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001281281.1 | 0.0 | heat shock factor protein 4 | ||||
Swissprot | Q9SCW4 | 3e-79 | HFB2A_ARATH; Heat stress transcription factor B-2a | ||||
TrEMBL | D9ZJ28 | 0.0 | D9ZJ28_MALDO; HSF domain class transcription factor | ||||
STRING | XP_008377312.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2037 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 3e-78 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | MDP0000155667 |
Entrez Gene | 103440408 |
Publications ? help Back to Top | |||
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