PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000155544
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 417aa    MW: 46178.3 Da    PI: 4.9161
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000155544genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.3e-1770159299
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    +kv++ps+v+   +l lpkkf+ e+   ++++++++ledesg+++  k+ ++k +    l++GW++F  a++L egD+vvF++      +l+v ++
  MDP0000155544  70 LKVMLPSHVTGGFWLGLPKKFCCENL--PKQDTMIVLEDESGEEFHTKYLVEKVG----LSGGWRGFSIAHNLLEGDVVVFHVLA--PSKLKVYIV 157
                    699*******************8884..347889***************444444....***********************655..444588887 PP

                    -S CS
             B3  98 rk 99 
                    r+
  MDP0000155544 158 RS 159
                    75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-2263161IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-1964161IPR015300DNA-binding pseudobarrel domain
CDDcd100175.12E-2567158No hitNo description
PROSITE profilePS5086312.40769160IPR003340B3 DNA binding domain
SMARTSM010196.3E-1869160IPR003340B3 DNA binding domain
PfamPF023622.1E-1570159IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MCGGLGFETH CCCGSQIYDQ KEVVSANPKS NKRKRATVDS LYGTCQAPSS VLERAKEVEA  60
TLDXRFPVLL KVMLPSHVTG GFWLGLPKKF CCENLPKQDT MIVLEDESGE EFHTKYLVEK  120
VGLSGGWRGF SIAHNLLEGD VVVFHVLAPS KLKVYIVRSN GSDDLDGALG LMRLDACTKQ  180
MDTGDIIACE GEDSENLESI PDDNAIAFDT KSGLSSDHSG NDSENLDFEV LDGLRLSETV  240
VTFEEVNCME NFNVLVNGLN INSKFSKHIL RKYYELCCSQ NAFLHEQLIE GLNCKLVAGV  300
ISETVNIADA IRACKITTSK GNFSTWDTTL KAFDDLGMNV GFLSARLDHL TSLGLKSKRF  360
KEAKLEKDRA EEEKRNLEAK LTEVQNAIIR LASEMKTLNT SSEKLELMFQ EVAKAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017181708.20.0B3 domain-containing protein Os01g0234100-like isoform X1
RefseqXP_017181709.20.0B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A498J3P70.0A0A498J3P7_MALDO; Uncharacterized protein
STRINGXP_008349878.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-39B3 family protein