PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000155389

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

M-type_MADS

Protein Properties

Length: 220aa MW: 24809.2 Da PI: 5.2557

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000155389	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.1	2.5e-14	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+i+nk + tfskRr+g++ KA L+ L++a avi fs+ +k MDP0000155389 9 KKINNKNYLKATFSKRRKGLFRKATDLCCLTGATLAVIAFSPGNK 53 68999************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.007	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.0E-20	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-21	1	71	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-11	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-16	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-11	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-11	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MGKNKIDIKK INNKNYLKAT FSKRRKGLFR KATDLCCLTG ATLAVIAFSP GNKPFLFGHP 60 SAESVIDRFL AEQARCASDD RKEEVLESGS AGXEHKNLES SREEEKEGGQ GMDEENGNFW 120 WEEPIDEGLE LPELKKYKSL LERLRENXAI KLDEMNRREL CTKDYFGMNW GFEVGSSFGV 180 ATVVAPPSAG EITGSFEKGH GLESIFGYFN LKFXEFWSSQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028955714.1	1e-125	agamous-like MADS-box protein AGL61
TrEMBL	A0A498KBJ4	1e-124	A0A498KBJ4_MALDO; Uncharacterized protein
STRING	XP_008385539.1	1e-104	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	4e-29	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	MDP0000155389