PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000154138
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 1165aa    MW: 129665 Da    PI: 6.5299
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000154138genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP77.91.6e-24141199159
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeek 59 
                    +Cqv++C +d++e+k yhrrh+vC ++++a++v ++g+++r+CqqC++fh ls+fDe+ 
  MDP0000154138 141 RCQVPSCGVDIKELKGYHRRHRVCLACANASTVDIDGESKRYCQQCGKFHVLSDFDEDC 199
                    6*******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-23135198IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.717139216IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-23140199IPR004333Transcription factor, SBP-box
PfamPF031107.3E-19142208IPR004333Transcription factor, SBP-box
SMARTSM0032039900951IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.6E-369231161IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.35E-35924997IPR017986WD40-repeat-containing domain
SMARTSM003200.008810261067IPR001680WD40 repeat
PROSITE profilePS5029423.75610351165IPR017986WD40-repeat-containing domain
SuperFamilySSF509782.35E-3510361160IPR017986WD40-repeat-containing domain
PROSITE profilePS500829.57310421076IPR001680WD40 repeat
SMARTSM003201.3E-610701110IPR001680WD40 repeat
PROSITE profilePS5008211.3110771110IPR001680WD40 repeat
PfamPF004000.001310781110IPR001680WD40 repeat
SMARTSM003200.002311171156IPR001680WD40 repeat
PfamPF004000.1311231156IPR001680WD40 repeat
PROSITE profilePS5008212.41311241165IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1165 aa     Download sequence    Send to blast
MQSXPPLSPT QSQRQRLDQP PRVSQMEIQP PLPSDDTSTV WEWGDLFDFT VDDDLSISWG  60
SAEYPDPEVG PAPEHLLEDP NSNSSRIRKR DPRLACPNFL AGHIPCACPE IDAKMMELEE  120
EEAGHGKKRV KTGRAPNGTA RCQVPSCGVD IKELKGYHRR HRVCLACANA STVDIDGESK  180
RYCQQCGKFH VLSDFDEDCL QLSSQLNEEE ELLESQGGQT PILCSVPESQ NIRSDSGVSF  240
MASGETQMDA RKHDSNNSLS PSNCDNKSYS SMCPTGRISF KLYDWNPAEF PRRLRHQIFE  300
WLASMPVELE GYIRPGCTIL TIFIAMPNFM WMKVMVLAIL FLLEDPVSYL HEFVIVPGKM  360
LSGRSNILIY LNDMIFRVVK DGTSVXKTKV EVRAPRLHYV HPTCFEAGKP MEFVACGKSK  420
TAVTFLVSFS GKYLEYDYSP PSSHSQIDGX TASNLDHQFF QIQVPQTESD CFGPAFIEIE  480
NESGLSNFIP VLIGDKEVCA EMKTIQXRFD ESLSLQGLHF SSRVSLSNSC EASSMRHTAF  540
SDIILDIAWL LKKPLSENFQ QIMTASQIQR FNYLLNFLIS IKSTTILDKV LQNLKTLMVN  600
MELNSANNDS VDADMRLLQN YMKYARDLLC KKFESSXVSV RESGRLVKXE DLVSQSQTCF  660
QNDGKSVAPF HCEDTEITVD GRLGITXGST ANERSETVPX LSKKAVGKAN FIKELPSVAK  720
CXTSGEVLRX RSSGMFLRFR PALFVISATA ICVGLCAVLI HPHKTGCLLC LVNKKPWFSN  780
GIASKLNLMV TKSAGKGPTL LSLRPSRLII VCFSMTTPCI QTCMSFHGGD YSTLXLCSNL  840
HGPSPLTQFV GIEARFAQHK SRPHQLLXGD MPGKLRLPVS TMKMLVGRES NHSGRGRFSS  900
ADCCHVLSRY LPLNGPWGVD QSRSPAYVSQ FSNDGLFFVA GFQGGHIRIY NVEKGWKVQK  960
DILTQSLRWT ITDTSLSPDQ RYLVYASMTP VVNIVNVESS KTESLANVTY KLPSVESQGG  1020
DLLEIHGGLD FSIDDDEDEF GIFSVKFSTD GRELVAASSD ASIYVYDLQE NKVSLRIPAH  1080
QSDVNTVCFA DESGHLIYSG SDDNLCKVWD RRCLMTKGKA AGVLMGHLEG VTFIDSRGDG  1140
RYLISNGKDQ TTKLWDIRKM SSTAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-26140197461squamosa promoter binding protein-like 7
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.15420.0fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPAU827601e-162U82760.1 Prunus armeniaca LEC14B homolog mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008340872.20.0squamosa promoter-binding-like protein 7
TrEMBLA0A498HR470.0A0A498HR47_MALDO; Uncharacterized protein
STRINGXP_008340871.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.20.0squamosa promoter binding protein-like 7