PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000153445 | ||||||||
Common Name | AP2D31 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 31086.1 Da PI: 5.0879 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.4e-20 | 129 | 179 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp++ng +r++lg++ tae+Aa a+++a+ k++g MDP0000153445 129 HFRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETAEGAALAYDQAAFKIRG 179 69*******.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.35E-30 | 128 | 189 | No hit | No description |
SMART | SM00380 | 4.4E-38 | 129 | 193 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.775 | 129 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-13 | 129 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-22 | 129 | 188 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 129 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-12 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-12 | 169 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MFEDICLVSD FSLLESIRQH LLDDNFDTTL QELSPTASGS PPPMHSQSLS FSTLFSTESW 60 XDMPFKVELE DTNDVVGSLS DGTDEWSPSS DHHHVDVIES TPVKPEPWEV VREEIVVVRE 120 THTPXSRQHF RGVRRRPWGK YAAEIRDPKK NGARVWLGTY ETAEGAALAY DQAAFKIRGX 180 KAKLNFPHLI GSEGCEPVRV TXKRRXPEFS TSSSSSESGS PKPKRRNIGL RTAAEAESGS 240 TSRXEMVEMS QXAAVDQWLX DLNTTXSPMX HELLISGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-29 | 128 | 187 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-29 | 128 | 192 | 4 | 68 | ATERF1 |
3gcc_A | 2e-29 | 128 | 192 | 4 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.27028 | 0.0 | root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732455 | 0.0 | GU732455.1 Malus x domestica AP2 domain class transcription factor (AP2D31) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009335578.1 | 1e-170 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Refseq | XP_009335605.1 | 1e-170 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | D5L115 | 0.0 | D5L115_MALDO; AP2 domain class transcription factor | ||||
STRING | XP_009335578.1 | 1e-169 | (Pyrus x bretschneideri) | ||||
STRING | XP_009335605.1 | 1e-169 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 7e-43 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000153445 |
Publications ? help Back to Top | |||
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