PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000153436
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 253aa    MW: 28128.7 Da    PI: 5.1588
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000153436genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.1e-1791140255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr +  +g+Wv+eIr+p +   + r++lg+f  +e+Aa+a++ a++ ++g
  MDP0000153436  91 TYRGVRMRQ-WGKWVSEIREPXK---KSRIWLGTFPIPEMAARAHDVAALTIKG 140
                    69****998.**********743...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.62991148IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2091149IPR016177DNA-binding domain
PfamPF008479.4E-1191140IPR001471AP2/ERF domain
SMARTSM003801.7E-3591154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3091149IPR001471AP2/ERF domain
CDDcd000181.41E-3292150No hitNo description
PRINTSPR003676.2E-1292103IPR001471AP2/ERF domain
PRINTSPR003676.2E-12130150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGEEQFNFID SEAQTTSSSY SNSTTSQSQK ISKRSSSSNQ LELLXGHQKA ATALTTNXDD  60
DDDDQISKKK AKIKKRINGD GRQQRHPHHP TYRGVRMRQW GKWVSEIREP XKKSRIWLGT  120
FPIPEMAARA HDVAALTIKG SSAVLNFPDL AQELPIPASA SPKDIQAAAA KAAALTYXSS  180
SLEQEAEVET ELISQAVHDS SPHDSSSTSP STNYNDDXFF DLPDLLLDVG HHSDHGFIFS  240
VPWLDEEPEF LWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16891481272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028960373.11e-137LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF039-like
SwissprotQ9ZQP32e-46ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A498JQM20.0A0A498JQM2_MALDO; Uncharacterized protein
STRINGXP_009368950.11e-115(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]