PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000152629
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 627aa    MW: 70566.3 Da    PI: 9.5776
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000152629genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-20253306356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t++q++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  MDP0000152629 253 KKRRLTPDQVHMLEKSFETENKLELERKTQLAKKLGLQPRQVAVWFQNRRARWK 306
                    5678*************************************************9 PP
2HD-ZIP_I/II129.81.1e-41252343192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    ekkrrl+ +qv++LE+sFe+e+kLe erK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ ke+++L++++ 
  MDP0000152629 252 EKKRRLTPDQVHMLEKSFETENKLELERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDTLLSDYDSILKENQKLKSQVV 343
                    69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-20236310IPR009057Homeodomain-like
PROSITE profilePS5007117.783248308IPR001356Homeobox domain
SMARTSM003897.6E-20251312IPR001356Homeobox domain
PfamPF000461.5E-17253306IPR001356Homeobox domain
CDDcd000861.48E-17253309No hitNo description
Gene3DG3DSA:1.10.10.605.1E-21254315IPR009057Homeodomain-like
PRINTSPR000311.7E-5279288IPR000047Helix-turn-helix motif
PROSITE patternPS000270283306IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5288304IPR000047Helix-turn-helix motif
PfamPF021831.1E-16308349IPR003106Leucine zipper, homeobox-associated
SuperFamilySSF479389.02E-19501552No hitNo description
PfamPF028401.9E-18501568IPR004098Prp18
Gene3DG3DSA:1.20.940.108.8E-20501552No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008380Biological ProcessRNA splicing
GO:0005681Cellular Componentspliceosomal complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MIQKPLLAHK FEENYRFMNK DWVFLSGDFA GEIATMGPLY KKKDIQINIE RGSDYLISMA  60
TGSGKSNIWL DFLHSVMIRT SPSIENAYMP FDNTPVEQQQ KKAESAMDSK ATPDPSLRQV  120
QRPGPALKAQ IRVFFHAQSL RKNQRRIIHA PPVPASARSS PKEDQEISCL AGKDDGAGPF  180
FFFEPSPSSA VCQPGGGGNM LFLGNPDHVF RGPRSMMGLM DQESSRRRPF FSSSSSQDEL  240
FDEEYYDEQL PEKKRRLTPD QVHMLEKSFE TENKLELERK TQLAKKLGLQ PRQVAVWFQN  300
RRARWKTKQL ERDYDLLKSS YDTLLSDYDS ILKENQKLKS QVVSINKKLG ADDHDDEKRG  360
PLLPAGDQMT EVVPITSLKY SCSVKVEDRL SSGSGGSAVV DEAEVPQPVD SSDSYNFPNN  420
IHNYYPHDHH TYHHHHQYTM PPTTMLLPTA TLRNIACLNR LRAMNAKVIR NKLTGLPEGL  480
SSKQSKRNGF RGISDEEDGQ ACRKKILQND IRIALMVVVQ CCMKRDYLAA MDQYIKLAIG  540
NAPWPIGVTM VGSPPVFTRR TELHKAFKKK KNGGSALVPS STSSPRLLAY TWPPLSSSRF  600
SPCSSSPRLA SSTPCFPSSS IPAKHHI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300308RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.115230.0cell culture| fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6787880.0JQ678788.1 Malus x domestica HB-1 (hb-1) mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-48homeobox 1