PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000152443
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 810aa    MW: 92107.7 Da    PI: 9.4359
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000152443genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064694719123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                    ++C    C++sF ++++L  H r+ +
  MDP0000152443 694 FVCDleGCTMSFASRHELSLHKRNiC 719
                    899999****************9877 PP
2zf-C2H213.80.00018719741323
                    ET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                    Cp   Cgk F ++ +L++H r+H
  MDP0000152443 719 CPvkGCGKKFFSHKYLVQHRRVH 741
                    9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.3E-4688716IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035518694716IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.152717746IPR007087Zinc finger, C2H2
SMARTSM003550.0045717741IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-7719740IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280719741IPR007087Zinc finger, C2H2
SuperFamilySSF576672.95E-10733775No hitNo description
Gene3DG3DSA:3.30.160.605.5E-9741767IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.824747776IPR007087Zinc finger, C2H2
SMARTSM003550.0017747771IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280749771IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-7765799No hitNo description
Gene3DG3DSA:3.30.160.607.9E-9768800IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.658777808IPR007087Zinc finger, C2H2
SMARTSM003554.7777803IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280779803IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MPRETSALGL LALNYGNSSD LEEDQVETDA PVCSDEPKVT NCSLESRYRD QSASLPSGGT  60
SGVHSPSSPG SDCENELRLQ NFDHYATDGR KIANFKDTGH QDIDSSADFR TNNYASTATG  120
FGKAIVPIQK TNTSCHPGCD EDSSRMHVFC LEHAVEVQQQ LRSIGGVHIL LLCHPDYPRI  180
EDEAKSMAEE LGISYLWNDM AFMNATKEDE TRIKLALDSE DAIAGNGDWA VKLGINLFYS  240
ASLSRSHLYS KQMPYNSVIY KAFGRSSPAS SPTRIDVYGR RGGKPKKVVA GKWCGKVWMS  300
NQVHSFLVKR DPEEEVEVAE DEEERPFRAW AMPEEDDEVK SEITRRTEKT VKKYARKRKM  360
TADTRTAKKA KCFEKEDAVS DYSLDDNSHQ QQRRLPKSKQ AKHIERGRTK KAKGIETHDA  420
FSDDXMQEDD SHQQNGRILH SEQVEYIERS DVSDDSVGID SHQQHRRTAK SKQFKPVETD  480
VVSDDSFEGS SHQPRRVLRS KTTKCTGREN LISEDVRGFS SHQQRRSISR SKQARARFME  540
REDTSLDETP EDTSHQHKRN LRNKQTKPET RGKMRQETSR QVKQGTAPLV KQGTRTLRNQ  600
QTPQXXKKQT PRLRNNQSEQ NNQSEQNSFD LYAEDETEGG PSTRLRKRAP KPSKVPGTKS  660
KEQQQTARKK AKNASAGKTQ AGRNETKREE DGEFVCDLEG CTMSFASRHE LSLHKRNICP  720
VKGCGKKFFS HKYLVQHRRV HTDDRPLRCP WKGCKMTFKW AWSRTEHIRV HTGARPYVCA  780
EPGCAQTFRF VSDFSRHKRK TGHSAKKSKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A4e-6969481023139Lysine-specific demethylase REF6
6a58_A4e-6969481023139Lysine-specific demethylase REF6
6a59_A4e-6969481023139Lysine-specific demethylase REF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.113720.0bud| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374335.20.0LOW QUALITY PROTEIN: lysine-specific demethylase REF6
TrEMBLA0A498JKN10.0A0A498JKN1_MALDO; Uncharacterized protein
STRINGXP_008346713.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-79relative of early flowering 6