PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000152400
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 318aa    MW: 35519.2 Da    PI: 9.7282
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000152400genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.81.6e-30962361127
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee..v.ikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgy 82 
                    lppG+rF Pt+eel+++yL++k++g++      l   +  + ++ +++y +  + + +    +v++ + ++w+f ++r++++ +g r++  t++gy
  MDP0000152400  96 LPPGYRFYPTEEELISFYLHNKLDGRSgnlnrvL---DriIpMQYFNLYIFRYHIILElvsgEVSHgDLEQWFFXIPRQESEXRGGRPRXLTTTGY 188
                    79*************************5554322...12222555566655544332244554444145599999********************* PP

            NAM  83 Wkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                    Wkatg+   v+s+    ++++g k+t+ fy+grap+g+kt+W+m+ey+
  MDP0000152400 189 WKATGSPSIVYSSnsnYNHAIGHKRTMGFYTGRAPHGKKTEWMMNEYK 236
                    ***********985555556***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-3292281IPR003441NAC domain
PROSITE profilePS5100536.37796281IPR003441NAC domain
PfamPF023651.3E-1897236IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGENPNPTRP PPPPKSLPFR CTRRRCRVRS EASWRTRVFN PSMSSRPGSS TITPAPTSEL  60
STAVTCATGR GGAXVLEVVL LGLGEGAGEA DAMEDLPPGY RFYPTEEELI SFYLHNKLDG  120
RSGNLNRVLD RIIPMQYFNL YIFRYHIILE LVSGEVSHGD LEQWFFXIPR QESEXRGGRP  180
RXLTTTGYWK ATGSPSIVYS SNSNYNHAIG HKRTMGFYTG RAPHGKKTEW MMNEYKGIEV  240
HADHNNQLSM TASSSNTSTS TSTPSAPTLR EEFSLCRVYK KSKCLRAFDR RPPGIEITRN  300
PTLIIQAAPA QGGIICRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-24862828169NAC domain-containing protein 19
3swm_B6e-24862828169NAC domain-containing protein 19
3swm_C6e-24862828169NAC domain-containing protein 19
3swm_D6e-24862828169NAC domain-containing protein 19
3swp_A6e-24862828169NAC domain-containing protein 19
3swp_B6e-24862828169NAC domain-containing protein 19
3swp_C6e-24862828169NAC domain-containing protein 19
3swp_D6e-24862828169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366767.11e-112PREDICTED: NAC domain-containing protein 90-like
TrEMBLA0A498HXI21e-126A0A498HXI2_MALDO; Uncharacterized protein
STRINGXP_008391863.11e-127(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-45NAC domain containing protein 90