PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000151620
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 582aa    MW: 66896.8 Da    PI: 10.3282
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000151620genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044466491123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                    ++C    C++sF ++++L  H r+ +
  MDP0000151620 466 FVCDleGCTMSFASRHELSLHKRNiC 491
                    899999****************9877 PP
2zf-C2H214.30.00012491513323
                    ET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                    Cp   Cgk F ++ +L++H r+H
  MDP0000151620 491 CPvkGCGKKFFSHKYLVQHRRVH 513
                    9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-4460488IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035518466488IPR015880Zinc finger, C2H2-like
SMARTSM003550.0045489513IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.152489518IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-7491512IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280491513IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-10505547No hitNo description
Gene3DG3DSA:3.30.160.603.7E-9513539IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017519543IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.824519548IPR007087Zinc finger, C2H2
PROSITE patternPS000280521543IPR007087Zinc finger, C2H2
SuperFamilySSF576675.78E-8536571No hitNo description
Gene3DG3DSA:3.30.160.605.3E-9540572IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.7549575IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658549580IPR007087Zinc finger, C2H2
PROSITE patternPS000280551575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MAEELGISYL WNDMAFMNAT KEDETRIKLA LDSEDAIAGN GDWAVKLGIN LFYSASLSRS  60
HLYSKQMPYN SVIYKAFGRS SPASSPTRID VYGRRGGKPK KVVAGKWCGK VWMSNQVHSF  120
LVKRDPEEEV EVAEDEEERP FRAWAMPEED DEVKSEITRR TEKTVKKYAR KRKMTADTRT  180
AKKAKCFEKE DAVSDYSLDD NSHQQQRRLP KSKQAKHIER GRTKKAKGIE THDAFSDDXM  240
QEDDSHQQNG RILHSEQVEY IERSDVSDDS VGIDSHQQHR RTAKSKQFKP VETDVVSDDS  300
FEGSSHQPRR VLRSKTTKCT GRENLISEDV RGFSSHQQRR SISRSKQARA RFMEREDTSL  360
DETPEDTSHQ HKRNLRNKQT KPETRGKMRQ ETSRQVKQGT APLVKQDETE GGPSTRLRKR  420
APKPSKVPGT KSKEQQQTAR KKAKNASAGK TQAGRNETKR EEDGEFVCDL EGCTMSFASR  480
HELSLHKRNI CPVKGCGKKF FSHKYLVQHR RVHTDDRPLR CPWKGCKMTF KWAWSRTEHI  540
RVHTGARPYV CAEPGCAQTF RFVSDFSRHK RKTGHSAKKS KK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A8e-7146658223139Lysine-specific demethylase REF6
6a58_A8e-7146658223139Lysine-specific demethylase REF6
6a59_A8e-7146658223139Lysine-specific demethylase REF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.113720.0bud| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374335.20.0LOW QUALITY PROTEIN: lysine-specific demethylase REF6
TrEMBLA0A498JKN10.0A0A498JKN1_MALDO; Uncharacterized protein
STRINGXP_008346713.10.0(Malus domestica)
STRINGXP_008374335.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-131relative of early flowering 6