PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000150879

Common Name

SUP3

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 201aa MW: 22546.9 Da PI: 7.7427

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000150879	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H MDP0000150879 33 YECNFCKRGFTNAQALGGHMNIH 55 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.08E-7	30	60	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	31	59	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.593	33	60	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	35	55	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MDSSQANQEN SDQVMTSDDQ QQQGASKQAA KSYECNFCKR GFTNAQALGG HMNIHRKDKA 60 KLKQVSSSNT IETKHHQQQQ QKQNVLDFPK MPSLDSPILP TINSLQHNKP IGRDIDRNTI 120 RAPWPWLISE KSDTTMQQLA LFSQTPSHNK DHQNPGTPQV HGDQLENSLQ LSGSELDLEL 180 RLGPEPQNSS SSTANTTRKF F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ260429	0.0	HQ260429.1 Malus domestica cultivar Fuji C2H2 type single zinc finger protein (SUP3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315763.1	1e-147	probable transcriptional regulator RABBIT EARS
TrEMBL	K9JIE8	1e-146	K9JIE8_MALDO; C2H2 type single zinc finger protein
STRING	XP_008356748.1	1e-147	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3335	31	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	1e-15	C2H2 family protein

Link Out ? help Back to Top
Phytozome	MDP0000150879