PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000150465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 24904 Da PI: 9.9015 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.1 | 2e-20 | 54 | 107 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe +++++ e++++LAkklgL+ rqV vWFqNrRa++k MDP0000150465 54 KKRRLTLDQVHMLEKSFETDNKLKPERKTQLAKKLGLQPRQVAVWFQNRRARWK 107 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 133.9 | 5.7e-43 | 53 | 144 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qv++LE+sFe+++kL+perK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ ke+++L++++ MDP0000150465 53 EKKRRLTLDQVHMLEKSFETDNKLKPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDTLLSDYDSIIKENQKLKSQVV 144 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.67 | 49 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-19 | 52 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.31E-16 | 54 | 110 | No hit | No description |
SuperFamily | SSF46689 | 1.03E-19 | 54 | 120 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.2E-17 | 54 | 107 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 56 | 116 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.8E-6 | 80 | 89 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 84 | 107 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.8E-6 | 89 | 105 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.7E-18 | 109 | 150 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MLFLGNPDHV FRGPRSMMGL MDQESSRRRP FFSSSSSQDE LFDEECYDEQ LPEKKRRLTL 60 DQVHMLEKSF ETDNKLKPER KTQLAKKLGL QPRQVAVWFQ NRRARWKTKQ LERDYDLLKS 120 SYDTLLSDYD SIIKENQKLK SQVVSINEKL GGKEQASSTK AAAFAADDHD DEKRDPLLPT 180 GNQLVERQGG GPPELRERRK CRGGRGRRPS AYGQQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 109 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11523 | 0.0 | cell culture| fruit| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ678788 | 0.0 | JQ678788.1 Malus x domestica HB-1 (hb-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315708.1 | 1e-109 | homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | Q02283 | 9e-65 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A222U9V3 | 1e-110 | A0A222U9V3_MALDO; Homeodomain leucine zipper protein | ||||
STRING | XP_008367440.1 | 1e-130 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11283 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-43 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000150465 |
Publications ? help Back to Top | |||
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