PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000150429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HSF | ||||||||
Protein Properties | Length: 345aa MW: 38916 Da PI: 8.7186 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.5 | 6.9e-36 | 74 | 164 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k+y++++d++++++isws++g+sfvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF ++sF++g+k+ll++i MDP0000150429 74 FLTKTYQLVDDPSIDDVISWSDDGSSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFLNDSFRRGEKRLLCEI 160 9*****************************************************************99.........******************* PP XXXX CS HSF_DNA-bind 98 krkk 101 +r+k MDP0000150429 161 QRRK 164 **98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.2E-38 | 64 | 158 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-58 | 70 | 163 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.95E-35 | 71 | 163 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 5.9E-21 | 74 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.9E-32 | 74 | 163 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.9E-21 | 112 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 113 | 137 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.9E-21 | 125 | 137 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MPLISKWTAK RQFSHKLIPS LPTAHKPPRP RNRRKSDPEV SRNGAAFDMA PTPVEPTGES 60 TSSESSQRAL PTPFLTKTYQ LVDDPSIDDV ISWSDDGSSF VVWNPTVFAR DLLPKYFKHN 120 NFSSFVRQLN TYGFRKVVPD RWEFLNDSFR RGEKRLLCEI QRRKINPPAP PVASVWAVPT 180 AKPIISPANS GDEQVISSSS SPIRASSEIM DENERLRKEN MQLTKELVEL KSLCNNIFTM 240 VSNYACAQSE SGFPELKPLD LMPGKRFPGK REHEEEEEAS PKLFGVAIGA KRAREARGDG 300 VENDETNLRL QQPSASEVKS EPSDIGHKET PWLKQCHMAN QRVCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-24 | 74 | 163 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-24 | 74 | 163 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-24 | 74 | 163 | 29 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00575 | DAP | Transfer from AT5G62020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008376546.1 | 0.0 | heat stress transcription factor B-2a-like | ||||
Swissprot | Q9SCW4 | 1e-92 | HFB2A_ARATH; Heat stress transcription factor B-2a | ||||
TrEMBL | A0A498JN67 | 0.0 | A0A498JN67_MALDO; Uncharacterized protein | ||||
STRING | XP_008376546.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2037 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 4e-88 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | MDP0000150429 |
Publications ? help Back to Top | |||
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