PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000148294
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 460aa    MW: 52223.2 Da    PI: 4.6059
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000148294genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS132.93.6e-41954577374
           GRAS   7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                    ++ ea++ g+ el   +L  l e ++p g++++Rla+ + +    + ++            + +++ s++   a++lf++++P+ +f+h +aN aI
  MDP0000148294  95 AFGEAMEMGQRELEVVILRCLVEKVNPLGQSLERLAFNLCQEVVDHQQG-----------DHLKQECSKNFEVAFNLFYQIFPFGRFAHYAANTAI 179
                    5566777777777777888888888888888888887765544444444...........3333344677788999******************** PP

           GRAS 103 leavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    leav ++ e+vH++ fd+++G+Q   L++aLa+R++    lR+T+++   ++       + + eet+++L++ A+++g++++ + +    +edl +
  MDP0000148294 180 LEAVPEDvEMVHVVEFDMGEGVQLSQLIEALAKRNKA---LRVTAIKWDVEEsdevapPQWRFEETKRQLQHHARSFGLNLKVEEI---PIEDL-V 268
                    ****9999**************************876...******976555668899999***********************98...66666.3 PP

           GRAS 192 eeL.rvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfdsleakl 275
                    +++ +v++    +E la n+++ l ++   +  ++    e+L+l k+l ++    ++++ + +  a++ n++sF   f + + +y al++sle+++
  MDP0000148294 269 SKIkKVNKrggmREFLAFNSMVGLPHMR--RRRSRGLLMEFLRLAKDLLANsargIITFGDGDacAKReNDSSFSSLFDSNVVHYKALLESLESSF 362
                    333133335588**************97..4444445799********87655669*****99765668*************************** PP

           GRAS 276 pres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvs 369
                    p +  e+r+++E +++++ +++    e+ +   +  +l+ W      +G++  ++s ++ ++ak ++   +s g rv  e+ +++ l W++ pL+ 
  MDP0000148294 363 PIHLgEARMVMELMFVAPYVSSQAWFEKWNESREGGNLQPW------FGLEGRRVSREMLMEAKEIVGADSSYGVRVGgEDGNEMALEWNSIPLIR 452
                    *999899**********************988888899999......8*****************************978888999********** PP

           GRAS 370 vSaWr 374
                    v  W+
  MDP0000148294 453 VETWT 457
                    *9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.90163436IPR005202Transcription factor GRAS
PfamPF035141.3E-3895457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MAEEEFPMEL GGFETNYLIR EIENMYASCL EGSEGSNTLP SQQFSVEGND VWSPNSFVTS  60
EASSMDGTSI QQSLILPRDE MEIDNEVSIL HLVKAFGEAM EMGQRELEVV ILRCLVEKVN  120
PLGQSLERLA FNLCQEVVDH QQGDHLKQEC SKNFEVAFNL FYQIFPFGRF AHYAANTAIL  180
EAVPEDVEMV HVVEFDMGEG VQLSQLIEAL AKRNKALRVT AIKWDVEESD EVAPPQWRFE  240
ETKRQLQHHA RSFGLNLKVE EIPIEDLVSK IKKVNKRGGM REFLAFNSMV GLPHMRRRRS  300
RGLLMEFLRL AKDLLANSAR GIITFGDGDA CAKRENDSSF SSLFDSNVVH YKALLESLES  360
SFPIHLGEAR MVMELMFVAP YVSSQAWFEK WNESREGGNL QPWFGLEGRR VSREMLMEAK  420
EIVGADSSYG VRVGGEDGNE MALEWNSIPL IRVETWTNRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-1415145673374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.45012e-72fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008366906.20.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A498IEP80.0A0A498IEP8_MALDO; Uncharacterized protein
STRINGXP_008350690.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-14GRAS family protein