PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000148178
Common NameAP2D39
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 278aa    MW: 29901.7 Da    PI: 5.3568
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000148178genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.5e-1865115155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+  ++g
  MDP0000148178  65 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAAMTIKG 115
                    68*****998.**********854...59*********************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-1265115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3166123IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-2166123IPR016177DNA-binding domain
SMARTSM003802.4E-3466129IPR001471AP2/ERF domain
PROSITE profilePS5103222.81366123IPR001471AP2/ERF domain
CDDcd000181.53E-2967123No hitNo description
PRINTSPR003674.8E-106778IPR001471AP2/ERF domain
PRINTSPR003674.8E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MADPTHSENE SSXNSSSPSP PSPSSSGFSQ SIPNSGLNQL PVRSDSPGPD QKRAKRVRET  60
SSKHPVYRGV RMRTWGKWVS EIREPRKKNR IWLGTFSTPE MAARAHDVAA MTIKGNSAIL  120
NFPGLAGSLP RPDSNSPRDI QAAAAKAASM ETLNPPPLPP PSHSSSSSSA LSQSSSSSSM  180
VGTTSTSGDA GTPEELGEIV KLPSLGTSYE SAESGSEFVF ADSVEGWLYP PPWWHNSYLE  240
EENGYNNLIN SIIRDDQMLM SEPPAAECVG VEAFLWQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1958123672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.165620.0bud| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324630.0GU732463.1 Malus x domestica AP2 domain class transcription factor (AP2D39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008362954.21e-155ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD31e-63DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLD5L1230.0D5L123_MALDO; AP2 domain class transcription factor
STRINGXP_009352529.11e-151(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-64ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]