PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000148156

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 383aa MW: 41003.8 Da PI: 8.402

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000148156	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	42	102	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+al+cprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk + MDP0000148156 42 PEQALNCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKIR 102 6899******************************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	43	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-33	44	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.357	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MMSSDTAPPT KPKDNENPTE GSGGSRPKAT SSSSSGPKLP PPEQALNCPR CDSPNTKFCY 60 YNNYSLTQPR HFCKTCRRYW TKGGALRNVP IGGGCRKNKK IRSSSSSNSR LSCSFDPSKD 120 SAGSSSSENM MLGGLKFFHG ISPAMDFQLG SISRLHNSNQ FSTNPATGIN FNNPFPAFGD 180 VSGTXGLSTX TLEPSAGGXT NACNNSFLGF NYPLTLGGRG GSASGSGGLI STQNMMSAMN 240 VHSSLASSIE SLSSINQDLH WKLQQQRLAM XFGTEEHDQS TQFQLENQQK TQQMITPISL 300 FQNLEVSSSP RPDHHQGVSH GRKEGGDTAT EWFFGNSYAP AVTQTPTNSG GGGGGASNEN 360 ASNWPHGIPA WSSHDWQQYN ALX

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MMSSDTAPPT KPKDNENPTE GSGGSRPKAT SSSSSGPKLP PPEQALNCPR CDSPNTKFCY  60
YNNYSLTQPR HFCKTCRRYW TKGGALRNVP IGGGCRKNKK IRSSSSSNSR LSCSFDPSKD  120
SAGSSSSENM MLGGLKFFHG ISPAMDFQLG SISRLHNSNQ FSTNPATGIN FNNPFPAFGD  180
VSGTXGLSTX TLEPSAGGXT NACNNSFLGF NYPLTLGGRG GSASGSGGLI STQNMMSAMN  240
VHSSLASSIE SLSSINQDLH WKLQQQRLAM XFGTEEHDQS TQFQLENQQK TQQMITPISL  300
FQNLEVSSSP RPDHHQGVSH GRKEGGDTAT EWFFGNSYAP AVTQTPTNSG GGGGGASNEN  360
ASNWPHGIPA WSSHDWQQYN ALX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008361450.2	0.0	dof zinc finger protein DOF5.7-like
TrEMBL	A0A498HTP4	0.0	A0A498HTP4_MALDO; Uncharacterized protein
STRING	XP_008361450.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-30	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	MDP0000148156